Peer Review History
| Original SubmissionNovember 18, 2024 |
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PONE-D-24-52929Climate: The dominant factor influencing the spatial distribution pattern of the leaf trait network of Populus euphratica along the main stream of the Tarim RiverPLOS ONE Dear Dr. Huang, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. The authors recently published a paper using the same dataset, as noticed by Reviewer #2, and it is suggested to explicitly state that this manuscript is the statistical rework of the mentioned study. However, statistical processing and interpretation seems to be a major problem in this manuscript, as also noted in both reviewers' reports. Some methodological omissions are also noted by Reviewer #1. The Discussion section is partially repetitive in relation to Results and more dedicated comparison with earlier studies dealing with the same topic is necessary. I strongly encourage the authors to meticulously check both reviewers' reports, which contain valuable instructions how to further improve the quality of the manuscript. Please provide point-by-point reply to each reviewers' comment. Please submit your revised manuscript by Mar 08 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The paper PONE-D-24-52929 presents spatial variation in leaf traits networks of Populus euphratica trees and investigates how variation in these networks might be correlated with climate and soil factors. Measurements were performed on mature trees sampled in 20 sites along the main stream of the Tarim River. 27 leaf traits were measured encompassing leaf morphology, anatomy and main nutrient stoichiometry. The authors show variation in the organization of the leaf traits networks across the sites and a couple of significant correlations with environmental variables, mainly related to climate. I believe the paper fits the journal scope and is of potential interest to the plant science community. I enjoyed reading the manuscript, overall I found it well written although it might benefit from additional information on some places or condensing on others (see comments below). The methods used seem well established (although not always referenced, see my comments below) and I did not note any major flaw. Please find below several comments that I hope will help the authors improving the manuscript. - Most of the work consists in correlating variation in trait networks with the environment (climate and soil variables). However, I found no biological information regarding the potential age (at least approximately) of the trees sampled, stand structure or the degree of genetic differentiation/connection among sites/populations. Since poplars depend on the stream for dispersion and colonization, we might expect some connection across populations. Such information might be interesting to explain the phenotypic patterns observed in network arrangement, both between and within sites, especially in a context of climate-driven adaptation. - Overall, I found the discussion a bit too results-like and lacked some depth with apparent redundancy and only a few studies cited. I believe the discussion section could be strengthened. - Considering the number of traits measured and used in the manuscript, a table or a list of trait abbreviations should be placed in the main text, not in the supplementary material. - Materials and Methods: there are many methods used to measure the 27 leaf traits, but most are not detailed neither referenced. I understand not all methods can be or have to be detailed in this case, but they should be at least referenced. - Abstract: L.13-22: this is too redundant. I would make one or two sentences max. The first sentence feels especially unspecific and vague. - Abstract: L.41-44: this can be streamlined. - Introduction: L47-74: these two first paragraphs can be clearly condensed to avoid redundancy and facilitate the reading. - L.97: has instead of was - What is Cell Tension Ratio? Unless I am mistaken, I did not see any definition. - L.188-200: Tables S3 and S4 should be permuted. - L.241: here and wherever needed: reduce the number of decimals - Results: I believe the last three sections of the results (relationships with soil, climate, and relative importance between the two) would benefit from streamlining, sticking to the most important findings. - L.303: pls add the information on how the PCA was built in the data analysis section (materials and methods) - L.306: why were SOM, WC and STK chosen as ‘representative’ indicators? Since the PCA is presented right before, I was expecting a choice based on their representation on the main planes, but it appears not. Please indicate why these variables were chosen among all others. - L.308-310: careful. If the p-values for correlation coefficients are not significant, then the sign of the coefficient cannot be taken as a proof for positive or negative relationships, since the test tests the significant deviation from the zero slope (so non-significant = not different from zero until proven otherwise). - L.328-329: same comment as above. Why were BIO3, BIO6 and BIO13 chosen among all variables? - L.330-332: same comment as above. Non-significant correlations indicate non-different from zero slopes, so neither negative nor positive relationships. - L.355: I think this title might be renamed to something a bit less redundant as the previous two sections. Maybe something like ‘Relative importance of climate vs. soil factors…’ - Fig.10: the legend needs to be detailed. Also, what are a, b and c referring to? Reviewer #2: Overall summary and opinion: Plant functional traits, particularly leaf traits, play a critical role in understanding how plants adapt to environmental changes and maintain ecosystem functions. Leaf traits serve as a bridge between plants and their environment, reflecting adaptability, self-regulation, and photosynthetic capacity. Variations in these traits, influenced by environmental stressors and phylogenetic history, reveal the strategies plants use to optimize resource acquisition, utilization, and distribution. As global environmental changes intensify, research on the relationship between leaf traits and environmental factors is essential for uncovering plant survival strategies and their ecological adaptation mechanisms. This knowledge not only enhances our understanding of plant-environment interactions but also supports the conservation and management of ecosystems. This study focuses on Populus euphratica, a drought-resistant species found along the ecologically fragile Tarim River in Xinjiang, characterized by water scarcity, severe soil erosion, and harsh climatic conditions. By integrating leaf trait network analysis, principal component analysis (PCA), and variance decomposition analysis (VPA), researchers explore how P. euphratica optimizes its leaf traits to adapt to the challenging environment. Building on a prior study that identified key traits like the lower stratum corneum (LSC) and midvein vascular bundle (MVB) as central to drought resistance, this study further examines the spatial variability of leaf traits across the Tarim River basin and their relationship with environmental factors like soil and climate. It is broadly understood that the goal is to reveal P. euphratica's adaptive strategies, providing insights for protecting these vital riparian forests and sustaining their role in mitigating desertification and supporting oasis ecosystems. Towards this end I would like to recommend a revised resubmission of the manuscript by considering following changes to the manuscript Major changes / revisions for authors: • One of the major concerns for this manuscript is the lack of originality in the study design as well as the data set described. The dataset used in this manuscript is described and analyzed using similar methods in https://doi.org/10.3390/f15030437 by the same authors. The LTN analysis does not significantly advance the ideas or methodology described in the said manuscript. It is recommended that the authors explicitly state that this study is an extension of the said previously published work. • It is helpful for the readers to know at some point why authors decide to use LTN strategies rather than directly investigate measured leaf traits. Therefore authors need to present a clear account of how measured leaf traits directly associate with soil and environmental data or present clear evidence that this was investigated in a previous study. • In order to alleviate some of the shortcomings described above, I personally feel that the authors should establish the unique space in which findings of this paper can be highlighted by focusing on the climate and environmental variables that are described in this study. They must first establish the environmental clines or at the least fully characterize the environmental and soil data and their variation along the collection points which can then be attributed to the LTN strategies. It is difficult to follow the main points in this manuscript due to the fragmented nature in which results are described. The manuscript would benefit from presenting a digestion of the data and LTN strategies rather than present a mere descriptive account of associations and statistics in the discussion section. • PC1 and PC2 describes a large portion of the variance across collection points using climatic variables. It also clear that these climatic variables influence LTN strategies in a collective manner. Therefore, it may benefit this study to look at the correlation of PCs to the LTN characteristics as well as individual climatic variables. A clustering of the collection points in terms of climatic and soil variables is absent in the study and such a characterization is fundamentally important in trying to understand ecosystem dynamics of this riparian forest. • The statistical analysis presented here in this study is weaker than even the authors’ first publication on the same dataset. For example, for statistics described (CV) in Figure 3 and 5, it is required to report at the least bootstrap standard error values. It is helpful for readers to know some measure of confidence in these summary stats especially given that there are only 20 sampling points in this study. Another example is that authors do not report the statistical significance of the variance component estimates described in Figure 10. One can use a method of permutation testing under full and reduced models using the same vegan R-package to do this with ease. There seems to be a general lack of disregard to statistical rigor shown throughout the manuscript. For example, claims made in lines 307-309 cannot be supported using statistical evidence. Therefore, it is strongly suggested that this is remedied in the revised submission. • Minor changes / suggestions for authors: • Lines 66-76: This entire section contains repetitive words and ideas. It is not entirely clear what the authors are trying to convey in this section as the sentences are too long and convoluted. • Lines 104-106: Please cite the ‘few reports’ mentioned in this section. This is especially required since it sets up the premise for this manuscript. Mention how this investigation can be set apart from a very similar analysis carried out by Yao et al., 2024 cited in this manuscript since the methodology and the population in question are the same. • Line 136: Should be DBH range 20-30cm instead of 20>30 cm? • Line 155: This notation for range is unconventional. Numbers should be separated by a hyphen or as ranges. For example, [0, 20] or (0, 20]. First indicates that the zero and twenty are included and the second notation states that the range includes values greater than zero up to and including twenty. • Figure 3: It will be helpful for the readers if colors in the sub-figure (a) match that of (b). Although I presume that shades of green were used in this figure since they depict attributes of green leaves, I feel a more color-blind friendly scheme would be more appropriate here. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy . Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org . Please note that Supporting Information files do not need this step.
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| Revision 1 |
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<div>PONE-D-24-52929R1Climate: The dominant factor influencing the spatial distribution pattern of the leaf trait network of Populus euphratica along the main stream of the Tarim RiverPLOS ONE Dear Dr. Huang, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== I deem all the reviewers' concerns have been addressed well in the revised manuscript. However, it seems the authors oversaw my own comments, one of which being " The authors recently published a paper using the same dataset, as noticed by Reviewer #2, and it is suggested to explicitly state that this manuscript is the statistical rework of the mentioned study." I do not see any mention on this issue in the manuscript, nor can I find any reply in response to reviewers. This is crucial information, and readers would need to be familiarized with this important fact. ============================== Please submit your revised manuscript by May 16 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols . Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols . We look forward to receiving your revised manuscript. Kind regards, Branislav T. Šiler, Ph.D. Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org . Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Climate: The dominant factor influencing the spatial distribution pattern of the leaf trait network of Populus euphratica along the main stream of the Tarim River PONE-D-24-52929R2 Dear Dr. Huang, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Branislav T. Šiler, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-24-52929R2 PLOS ONE Dear Dr. Huang, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Branislav T. Šiler Academic Editor PLOS ONE |
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