Peer Review History
| Original SubmissionNovember 2, 2024 |
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Dear Dr. Subbaraj, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Mar 21 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.
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Kind regards, Chinnaperumal Kamaraj, Ph.D Academic Editor PLOS ONE Journal requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please note that PLOS ONE has specific guidelines on code sharing for submissions in which author-generated code underpins the findings in the manuscript. In these cases, we expect all author-generated code to be made available without restrictions upon publication of the work. Please review our guidelines at https://journals.plos.org/plosone/s/materials-and-software-sharing#loc-sharing-code and ensure that your code is shared in a way that follows best practice and facilitates reproducibility and reuse. 3. Thank you for stating the following financial disclosure: [This research work was funded by Institutional Fund Projects under grant no. (IFPIP: 1174-290-1443). The authors gratefully acknowledge technical and financial support provided by the Ministry of Education and King Abdulaziz University, DSR, Jeddah, Saudi Arabia]. Please state what role the funders took in the study. If the funders had no role, please state: "The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript." If this statement is not correct you must amend it as needed. Please include this amended Role of Funder statement in your cover letter; we will change the online submission form on your behalf. 4. Please provide a complete Data Availability Statement in the submission form, ensuring you include all necessary access information or a reason for why you are unable to make your data freely accessible. If your research concerns only data provided within your submission, please write "All data are in the manuscript and/or supporting information files" as your Data Availability Statement. 5. In the online submission form, you indicated that your data will be submitted to a repository upon acceptance. We strongly recommend all authors deposit their data before acceptance, as the process can be lengthy and hold up publication timelines. Please note that, though access restrictions are acceptable now, your entire minimal dataset will need to be made freely accessible if your manuscript is accepted for publication. This policy applies to all data except where public deposition would breach compliance with the protocol approved by your research ethics board. If you are unable to adhere to our open data policy, please kindly revise your statement to explain your reasoning and we will seek the editor's input on an exemption. Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? Reviewer #1: Partly Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: Yes Reviewer #2: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: Yes Reviewer #2: Yes ********** Reviewer #1: This manuscript describes the Unleashing the anti-tumor angiogenic potential of nano-formulated orientin: in-silico, in-vitro, and in-ovo studies. Abstract: Reduce Introduction: Condense the introduction section, focusing on key points and omitting unnecessary details. Add results with relevant numerical data to strengthen the abstract. Acronyms: Expand acronyms, such as "US," to "United States" upon their first usage. Change the key word “In-vitro” Statistical Data: Include statistical data specific to cancer incidence or prevalence in the author's country for relevance. Flavonoids Introduction: Reduce the detailed discussion on “Flavonoids” to maintain focus. Repetition: In the line, “Orientin, Orientin, formerly known...,” delete the repeated word "Orientin." Study Objective: Elaborate on the novelty and objectives of the study at the end of the introduction. Methods: Chemical Quality: Rewrite the sentence “All other chemicals including solvents used in the present study were of high quality” as “All chemicals, including solvents used in the study, were of analytical or laboratory-grade quality, ensuring compliance with standard protocols.” Cell Culture Methods: Elaborate on cell culture techniques with an emphasis on reproducibility and methodology details. Formatting: Ensure uniform spacing between values and units, such as “10 mg” and “2 mL,” throughout the manuscript. 3D Structure and Docking: Provide detailed 3D structural representations with relevant amino acid residues, supported by dynamic simulation results in Figures 3 and 4. Docking Validation: Validate molecular docking simulations with corresponding in vitro experimental data. NF-O Size Concern: Address the concern regarding the large size of NF-O (220 nm) for nanoformulation in drug delivery and explain mitigation strategies. Results: Concentration Data: In the sentence, “The percentages of cell … at concentrations of 10 µM, 30 µM, and 50 µM, respectively,” delete repeated words for clarity. IC50 Values: Include IC50 values in the experimental analysis. Wound Healing: Write results from the wound healing assay more concisely. FTIR Results: Make FTIR results more precise and validate data effectively. Gene Expression: Conduct and report gene expression analysis with greater care to ensure accuracy. The molecular mechanism through which the specific nanoparticles (NPs) induce biological activities must be investigated using additional data. Discussion: Improvement: Revise the discussion section extensively, incorporating insights from recent high-impact articles. This will enhance the depth and relevance of the analysis. References: Follow journal-specific referencing guidelines (e.g., “Gothai et al., 2017”). Reviewer #2: Yeshwanth et al. reported results with the application of in silico, in vitro, and in ovo models to study the anti-angiogenic efficacy of a flavonoid, Orientin in nano-formulation. There are a few general and specific concerns. Minor comments In Fig. 9A, the X-axis is labeled as concentration. It can be labeled as 'test groups' or simply 'groups'. The legends are unnecessary in this figure since the group titles are already provided on the graph axis. Add a reference scale to the histology images, i.e., magnification and size of structures or features within images. The authors mentioned they have listed primer sequences in Table 1, but there are no such details. The authors mentioned the docking score value of ligand-receptor complexes only in the text part of the results. The binding energy (Kcal/mol) values must also be included in respective columns in the table. In PCR amplification protocol, mention of annealing and extension temperatures is missing in respective notes. In the Q-PCR analysis, the authors did not provide sufficient statistical parameters applied. Further details on whether one-way or two-way ANOVA was used, and whether a secondary test / post-hoc analysis was performed, and if yes, which one? and justify if not applied. Major comments The control group is missing in the histopathology section to compare with the treated counterpart. Adding that would be appropriate which would provide a valid and logical reference to compare the changes and modifications observed after treatment. In Figure 8, the microscopic images of the MTT assay are poor in terms of quality, clarity, and desired markings and focus. The concerned stress effects (aggregation, membrane disintegration/cell damage, cytotoxic effects) are not properly magnified. Authors need a kind of high-clarity/resolution images shot at 20X or 40X, whichever portrays convincingly a better visualization difference between control and treated cells. While the present research is interesting with ample experiments, why are the angiogenic markers studied only in the CAM model, and not with a bit higher-scale setting – in vivo or ex vivo aortic ring assay or a similar kind? Why not authors in addition consider it to demonstrate their preliminary impression with more validation in the purview of anti-angiogenic potential. The chosen in-ovo model seems in this study not to be so adequate to support the effect of the tested compound in a practical angiogenic setting, hence, performing further in a higher setting would be a pivotal component of the present study, as well as for the scope and readers of the PLOS ONE. ********** what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #1: Yes: Krishnan Raguvaran Reviewer #2: Yes: Guna Ravichandran ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org . Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Unleashing the Anti-tumor Angiogenic Potential of Nano-Formulated Orientin: In Silico, In Vitro, and In Ovo Studies PONE-D-24-48356R1 Dear Dr. Subbaraj, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Chinnaperumal Kamaraj, Ph.D Academic Editor PLOS ONE Additional Editor Comments (optional): We're delighted to let you know that your manuscript has been accepted for publication in PLOS One. Reviewers' comments: Reviewer's Responses to Questions Comments to the Author Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed Reviewer #3: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions??> Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** Reviewer #1: (No Response) Reviewer #2: The authors have satisfactorily addressed the minor comments. And hope they will implicate other revisions in future experiments as they would validate the findings for the desired efficacy. Reviewer #3: The author did excellent work for anticancer and in silico work. The author addresses all the comments. Now can proceed to publication in the PLOS Journal ********** what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #1: Yes: Krishnan Raguvaran Reviewer #2: Yes: Dr. Guna Ravichandran Reviewer #3: No ********** |
| Formally Accepted |
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PONE-D-24-48356R1 PLOS ONE Dear Dr. Subbaraj, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Chinnaperumal Kamaraj Academic Editor PLOS ONE |
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