Peer Review History
| Original SubmissionJuly 11, 2024 |
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PONE-D-24-24211ClusterRadar: an interactive web-tool for the multi-method exploration of spatial clusters over timePLOS ONE Dear Dr. Mason, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Mar 01 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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We recommend that you contact the original copyright holder with the Content Permission Form (http://journals.plos.org/plosone/s/file?id=7c09/content-permission-form.pdf) and the following text: “I request permission for the open-access journal PLOS ONE to publish XXX under the Creative Commons Attribution License (CCAL) CC BY 4.0 (http://creativecommons.org/licenses/by/4.0/). Please be aware that this license allows unrestricted use and distribution, even commercially, by third parties. Please reply and provide explicit written permission to publish XXX under a CC BY license and complete the attached form.” Please upload the completed Content Permission Form or other proof of granted permissions as an ""Other"" file with your submission. In the figure caption of the copyrighted figure, please include the following text: “Reprinted from [ref] under a CC BY license, with permission from [name of publisher], original copyright [original copyright year].” b. If you are unable to obtain permission from the original copyright holder to publish these figures under the CC BY 4.0 license or if the copyright holder’s requirements are incompatible with the CC BY 4.0 license, please either i) remove the figure or ii) supply a replacement figure that complies with the CC BY 4.0 license. Please check copyright information on all replacement figures and update the figure caption with source information. If applicable, please specify in the figure caption text when a figure is similar but not identical to the original image and is therefore for illustrative purposes only. The following resources for replacing copyrighted map figures may be helpful: USGS National Map Viewer (public domain): http://viewer.nationalmap.gov/viewer/ The Gateway to Astronaut Photography of Earth (public domain): http://eol.jsc.nasa.gov/sseop/clickmap/ Maps at the CIA (public domain): https://www.cia.gov/library/publications/the-world-factbook/index.html and https://www.cia.gov/library/publications/cia-maps-publications/index.html NASA Earth Observatory (public domain): http://earthobservatory.nasa.gov/ Landsat: http://landsat.visibleearth.nasa.gov/ USGS EROS (Earth Resources Observatory and Science (EROS) Center) (public domain): http://eros.usgs.gov/# Natural Earth (public domain): http://www.naturalearthdata.com/ 8. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. Additional Editor Comments: Overall Impression: The manuscript introduces a web tool, ClusterRadar, for exploring spatiotemporal clusters, addressing a genuine need. The authors have clearly articulated their design considerations and developed a user-friendly interface. However, several areas of the technical details, depth of analysis, and robustness could be improved. i. Structure and Organization: (Page 2, Line 42): The transition from the introduction to the background is abrupt. Include a brief introductory sentence to set up the background section, like "To understand the value of this tool, the following background information is necessary." (Page 3-4, Lines 110-162): The "Related work" section is lengthy and could be more concise. Summarize the main points to more effectively highlight the authors' unique contribution and improve the flow of the document. ** (Page 6-8, Lines 233-326):** The "Methods" section is very long and may lose the reader's attention. Consider adding subheadings to better organize the content and improve readability. (Page 9, Lines 358-368): The results section focuses excessively on the tool’s description and not enough on the derived insights. Reframe the section to focus on the analytical outputs and their potential applications. (Page 14, Lines 516-555): The use case scenario could be more robust, fully demonstrating all aspects of the tools interactivity and visualization abilities. Expand this section to include more in-depth analysis of the datasets. ii. Technical Content: (Page 6, Line 240-242): The justification for using a binary weight matrix could be stronger. Discuss the alternatives and their relative advantages and disadvantages. Throughout the document: The manuscript is long and does not emphasize the more technical aspects of the tool, such as implementation details, limitations, scalability, and computational efficiency. Highlight these points and provide supplementary documents if necessary. Throughout the document: There is not much discussion of the technical limitations, and where the tool could potentially fail. Address the limitations of this tool, both technical and methodological, to establish its intended use cases. iii. Scientific Merit: (Page 14, Lines 516-555): The analysis presented in the "Usage scenario" section is brief and the conclusions drawn are somewhat basic. Explore more of the tool’s functionality and provide a more in-depth analysis of the cancer mortality dataset, with stronger conclusions. The tool lacks robust validation. Include a section to validate the tool by comparing its performance with existing tools on standardized datasets. The manuscript does not include a deep discussion of the caveats in the analysis, particularly when combining multiple methods. Discuss the theoretical and practical caveats of combining different clustering methods. iv. Overall Suitability for Publication: The manuscript is rather lengthy and contains information that may distract from the core contributions of the paper. Revise the document to emphasize the core contributions, and remove or summarize some of the background information and technical details. The lack of robustness in the analysis, the lack of validation of the tool, and the lack of addressing methodological caveats could hamper its suitability for publication. Address these issues and create a supplementary document to include important but distracting technical details. Summary of Key Points The manuscript introduces a functional tool with great potential, but needs more emphasis on analytical rigor and robustness, with more efficient presentation. The above suggestions, including more concrete analyses, will help in the presentation of the core contributions. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The Cluster Radar is great, however, I would like to about how will we handle the missing data ? The US cancer data from CDC that you showed in the video is excellent that you can capture and found ONE county in New Jersey. However, I would like to know that if I cannot find the complete data set like that. How do we are going to deal with the missing data. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Uthumporn Panitanarak ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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ClusterRadar: an interactive web-tool for the multi-method exploration of spatial clusters over time PONE-D-24-24211R1 Dear Dr. Mason, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Nazarudin Safian, PhD Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-24-24211R1 PLOS ONE Dear Dr. Mason, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Professor Nazarudin Safian Academic Editor PLOS ONE |
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