Peer Review History
| Original SubmissionSeptember 2, 2024 |
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PONE-D-24-37946Chi2 Weighted Ensemble: A Multi-Layer Ensemble Approach for Skin Lesion Classification using A Novel Framework - Optimized RegNet Synergy with Attention-TripletPLOS ONE Dear Dr. Efat, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jan 31 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Kind regards, Veer Singh, Ph.D Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please note that PLOS ONE has specific guidelines on code sharing for submissions in which author-generated code underpins the findings in the manuscript. In these cases, all author-generated code must be made available without restrictions upon publication of the work. Please review our guidelines at https://journals.plos.org/plosone/s/materials-and-software-sharing#loc-sharing-code and ensure that your code is shared in a way that follows best practice and facilitates reproducibility and reuse. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: No Reviewer #2: Yes Reviewer #3: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: No Reviewer #2: Yes Reviewer #3: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes Reviewer #3: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: No Reviewer #2: No Reviewer #3: No ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The manuscript fails to meet the necessary standards for publication due to several significant issues. Firstly, the proposed Transfer Learning-based framework lacks sufficient novelty. Many of the techniques mentioned, such as the use of RegNet architectures, attention mechanisms, and Ensemble Learning, are already well-established in the field. While the authors introduce the $Chi^2$ Weighted Ensemble method, the manuscript provides insufficient detail on how this method differs meaningfully from existing ensemble techniques. Moreover, the Multi-Layer $Chi^2$ Weighted Ensemble appears to be an incremental improvement rather than a breakthrough innovation, and the manuscript lacks clarity on how this method substantively enhances model performance over traditional approaches. Additionally, while the manuscript reports high accuracy on the HAM1000 dataset, there is a lack of comprehensive evaluation. The authors rely heavily on a single dataset, which raises concerns about the generalizability and robustness of the proposed approach. The manuscript does not discuss performance on diverse or real-world datasets, which is essential for validating the broad applicability of any new technique, especially in critical applications like skin lesion detection. Furthermore, the interpretability aspect, while mentioned through the use of Gradient Class Activation Maps, is not explored in depth. The manuscript fails to provide sufficient evidence that the proposed method significantly enhances transparency or clinical relevance compared to existing interpretability techniques. The claims regarding improvements in early diagnosis, time, accessibility, and cost reduction are also not adequately supported by empirical evidence or detailed analysis. Finally, the manuscript suffers from a lack of clarity in explaining how the integration of the various attention mechanisms and the Ensemble Learning strategy leads to superior results. The methodology section lacks a clear, cohesive explanation, making it difficult to follow the progression of the approach from inception to evaluation. Overall, the manuscript does not offer enough innovation, depth of evaluation, or clarity in presentation to warrant publication. Reviewer #2: The manuscript titled " Chi2 Weighted Ensemble: A Multi-Layer Ensemble Approach for Skin Lesion Classification using A Novel Framework - Optimized RegNet Synergy with Attention-Triplet” is found to be well-structured. However, the manuscript needs to improve significantly. However, I have suggested revision that I believe will further enhance the clarity and impact of your manuscript: � The abstract section needs to be updated. � I suggest highlighting specific contributions or insights gained from the research in the abstract section. This will help differentiate your study from existing literature reviews on the topic and emphasize its novelty. � The quality of the figures needs to be improved in the revised manuscript. � Arrange significant figures throughout the manuscript. � I recommend incorporating the recent papers that have been discussed and cited in the manuscript. � Manuscript briefly elaborated on specific research gaps or areas that require further investigation. This could help readers understand the potential directions for future studies. Please add a future direction section or include it with the conclusion. � Please make sure to define each acronym at its first use. Check through the entire manuscript to make sure it is defined at the first use. � The English of the manuscript needs to be improved. � The conclusion section should be revised and concise. Reviewer #3: Dr. Anwar Hossain Efat's manuscript describes the Chi2 Weighted Ensemble: A multi-layer ensemble approach for skin Lesion classification using A novel framework- optimized regnet synergy with attention-triplet. This approach has been reported in the literature several times, and regular studies have been conducted on Transfer Learning-based frameworks incorporating Optimized RegNet Synergy architectures and Attention-Triplet, including channel attention, squeeze-excitation attention, and soft attention, combined with an advanced Ensemble Learning Strategy. What distinguishes the work of Dr. Anwar Hossain Efat is that it contributes to the early diagnosis of skin conditions and reduces the risks associated with neglect. However, the present protocol is very attractive from the viewpoint of this journal. So, I recommend publication in this journal; However, the manuscript needs major revisions before publication, particularly regarding the scope of the process. Some suggestions are listed below: 1. The alignment of the manuscript looks so poor (justify all the paragraphs). 2. Introduction requires more references to validate the author's points. 3. In terms of novelty, what are the potential practical applications of this research, particularly in the early detection and diagnosis of skin cancer? 4. How were the hyperparameters of the Optimized RegNet Synergy architectures and the Attention-Triplet modules tuned? 5. The study reports an impressive accuracy of 94.08% on the HAM1000 dataset. How does this performance compare to other state-of-the-art methods, and what factors contribute to the improved accuracy? (please include in the manuscript.) 6. The use of Gradient Class Activation Maps (Grad-CAM) is a valuable tool for model interpretability. Could you provide more insights into the specific regions highlighted by Grad-CAM and their relevance to the classification decisions? 7. How does the proposed Multi-Layer Chi2 Weighted Ensemble differ from other ensemble methods, such as bagging, boosting, and stacking? 8. Include the advantages and disadvantages of the Chi2 Weighted Ensemble method compared to other weighting schemes. 9. Figures 5 and 6,8 should be redrawn for the general readership of the audience. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Sachchida Nand Rai Reviewer #2: No Reviewer #3: Yes: Prasanth Thumpati ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. 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| Revision 1 |
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Chi2 Weighted Ensemble: A Multi-Layer Ensemble Approach for Skin Lesion Classification using A Novel Framework - Optimized RegNet Synergy with Attention-Triplet PONE-D-24-37946R1 Dear Dr. Efat, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. 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Kind regards, Fatih Uysal, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): After considering the referees' comments and evaluating the quality of the paper, it has been decided to accept it due to its potential to contribute to the literature and its final form. Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #3: All comments have been addressed Reviewer #4: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #3: Yes Reviewer #4: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #3: Yes Reviewer #4: I Don't Know ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #3: Yes Reviewer #4: (No Response) ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #3: Yes Reviewer #4: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #3: The authors acknowledge all the comments raised during the revision, and therefore the manuscript can be accepted in its present form. Reviewer #4: I read the manuscript and the answers of the authors to the other reviewers. The manuscript is suitable for the publication. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #3: Yes: THUMPATI PRASANTH Reviewer #4: No ********** |
| Formally Accepted |
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PONE-D-24-37946R1 PLOS ONE Dear Dr. Efat, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. PLOS Manuscript Reassignment Staff Editor PLOS ONE |
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