Peer Review History
| Original SubmissionDecember 12, 2024 |
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PONE-D-24-57472The Impact of Missing Data Rates and Imputation Methods on The Assumption of UnidimensionalityPLOS ONE Dear Dr. Baniamer, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Mar 07 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Please provide a complete Data Availability Statement in the submission form, ensuring you include all necessary access information or a reason for why you are unable to make your data freely accessible. If your research concerns only data provided within your submission, please write "All data are in the manuscript and/or supporting information files" as your Data Availability Statement. 4. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Yes Reviewer #3: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes Reviewer #3: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: No Reviewer #2: Yes Reviewer #3: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: 1. The author need explain the assumption of unidimensionality, not every one know this, especially how it is related to your missing value imputation study. 2. The missing value imputation research has been studied by many researchers, different methods have been proposed, but the author only refer and consider a small amount of methods, in the past year, the generative methods have been used to impute missing values, the authors should include more recent publications, for example, generative adversarial network based imputation methods: Gain: Missing data imputation using generative adversarial nets, International conference on machine learning, 2018 A novel f-divergence based generative adversarial imputation method for scRNA-seq data analysis. Plos one 2023 Multivariate Time Series Imputation with Generative Adversarial Networks. In Proceedings of the NeurIPS, 2018 ImputeGAN: Generative adversarial network for multivariate time series imputation. Entropy 2023 VAE based method: GP-VAE: Deep Probabilistic Time Series Imputation. In Proceedings of the AISTATS, 2020 Diffusion based method: Csdi: Conditional score-based diffusion models for probabilistic time series imputation. Advances in Neural Information Processing Systems 2021, There are a lot of new generative methods base imputation algorithm, you should cite more paper within 5 years. 3. The method is too simple, one suggestion, you should use a flowchart, or some pseudocode, to explain your method to make it more organized. The current method does not have too much novelty, very traditional methods. 4. The results section, the author use tables to show the comparison, I would suggest the authors use some figures to illustrate some of the results. Reviewer #2: This is a study investigating the impact of missing data imputation methods on the assumption of unidimensionality. The study primarily focuses on comparing the performance of three imputation methods—CIM, EM, and MI—under varying levels of missing data proportions, and employs multiple indicators to evaluate unidimensionality. However, the research has notable limitations, such as a lack of theoretical justification for the choice of imputation methods and the exclusive use of simulated data without incorporating real-world datasets. Key Issues 1. Insufficient Theoretical Justification for Imputation Method Selection The paper does not provide a sufficient theoretical basis for selecting CIM, EM, and MI as the focal imputation methods. To improve the study’s rigor, a detailed discussion should be added to justify why these methods were chosen over others. 2. Reliance on Simulated Data Without Validation Using Real-World Data The analysis is based solely on simulated data, which may undermine the external validity of the findings. It is suggested that future studies incorporate real-world data to validate and extend the conclusions. 3. Ambiguities in Formula Descriptions and Symbol Definitions The study contains issues with the descriptions of formulas, including ambiguous or flawed symbol definitions. This raises questions about the accuracy of the analysis. If there are errors in the definitions, it is unclear how the study was able to proceed with its investigations. A thorough clarification and correction of the formulas and their definitions are strongly recommended. 4. Lack of Distinction from Existing Literature The study's topic has already been extensively explored in prior research. However, the authors fail to articulate the unique contribution or novel aspects of their work. For example, several studies, such as the following, have already addressed similar topic Newman, D.A. (2003). Longitudinal Modeling with Randomly and Systematically Missing Data: A Simulation of Ad Hoc, Maximum Likelihood, and Multiple Imputation Techniques. Organizational Research Methods, 6, 328 - 362. Chukwu, A.U., Ezichi, O.N., & DikeA., O. (2015). On Comparison of Some Imputation Techniques in Multivariate Data Analysis. Mathematical theory and modeling, 5, 95-110. Di̇nçsoy, L.B., & Kelecioğlu, H. (2022). INVESTIGATION OF THE EFFECT OF MISSING DATA ON DIFFERANTIAL ITEM FUNCTIONING IN MIXED TYPE TESTS. Eğitimde ve Psikolojide Ölçme ve Değerlendirme Dergisi. Cheung, M.W. (2007). Comparison of Methods of Handling Missing Time-Invariant Covariates in Latent Growth Models Under the Assumption of Missing Completely at Random. Organizational Research Methods, 10, 609 - 634. 5. Theoretical Justification for the Selection of CIM, EM, and MI As mentioned earlier, there is a lack of theoretical discussion regarding the choice of CIM, EM, and MI. Additional details should be provided to explain why these specific methods were selected. Secondary Issues 1. Inadequate Details on Unidimensionality Indicators in the Abstract The abstract lacks a clear explanation of the specific unidimensionality indicators employed in the study. This information should be added to provide a more comprehensive overview of the methodology. 2.. Superficial Discussion of the Importance of Unidimensionality in the Introduction The introduction provides only a cursory explanation of the importance of the unidimensionality assumption. A deeper discussion of its theoretical and practical significance is recommended. 3. Unclear Table Numbering and Redundant Content Some tables in the results section are poorly numbered, and there is redundancy in the table content. A clearer and more concise presentation of the tables would improve the overall readability. 4. Insufficient Analysis of Study Limitations in the Discussion Section The discussion section does not provide an in-depth analysis of the study's limitations. For example, the lack of real-world data and potential biases in the selection of missing data proportions are not sufficiently addressed. Expanding on these aspects would enhance the comprehensiveness of the discussion. Reviewer #3: The paper examined the impact of missing data rates and imputation methods on fulfilling the assumption of unidimensionality, a core assumption supporting many statistical models. The importance/significance of conducting such study is not clearly highlighted in the paper. There are several similar studies that have been conducted, for instance the reference [19] has compared 6 methods for handling missing data, [49] compared 12 imputation techniques, and [30] in which 4 imputation techniques have been compared; comparing and highlighting their differences in a section (related work) would perhaps justify the motivation of conducting the study. A clear formal definition of unidimensionality should be given. A section on motivation of the study should be included to justify the significance of conducting the analysis. In the paper, the authors have examined three methods for imputing missing values, namely: multiple imputation (MI), expectation maximization algorithm (EM), and corrected item mean (CIM). Authors should deliberate on all possible methods for imputing missing values and justify the reasons for focusing only on the above three methods. Also, there are three mechanisms of missing data as defined in [17] that are Missing Completely At Random (MCAR), Missing At Random (MAR), and Missing Not at Random. While the study has assumed MCAR with missing rates of 1% … 50%. Justification on the selection of mechanism, i.e. MCAR, and the range of missing values is not clear. Why 50% is set as the highest missing rate? Also, the selection of 5000 examinees and a test of 50 items is not obvious. Moreover, performing the analysis on real dataset might result in more profound results. The discussion section is not well written as it merely reports the findings with regard to Cronbach’s α, CITC, Eigenvalues, CTV, and communalities which have been reported in the earlier sections. Moreover, the findings and discussions are based on the selected imputation techniques. It is not comprehensive as there might be other imputation techniques that would show better results. ********** 6. 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| Revision 1 |
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The Impact of Missing Data Rates and Imputation Methods on The Assumption of Unidimensionality PONE-D-24-57472R1 Dear Dr. Baniamer, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Henri Tilga, PhD Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: (No Response) Reviewer #2: In the revised manuscript, it is evident that the author has made every effort to address all the raised concerns. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy . Reviewer #1: No Reviewer #2: No ********** |
| Formally Accepted |
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PONE-D-24-57472R1 PLOS ONE Dear Dr. Baniamer, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Henri Tilga Academic Editor PLOS ONE |
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