Peer Review History
| Original SubmissionSeptember 20, 2024 |
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PONE-D-24-29510Waning of anti-SARS-CoV-2 antibodies after the first wave of the COVID-19 pandemic in 2020: a 12-month-evaluation in three population-based European studiesPLOS ONE Dear Dr. Novelli, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Your manuscript has been reviewed and requires modifications prior to making a decision. The comments of the reviewers are included at the bottom of this letter. The Reviewer 1 recommended minor change for your study, and revision on the discussion section. The Reviewer 2 recommended major revision and found methodological problems in the manuscript. I agree with this evaluation and I would, therefore, request for the manuscript to be revised accordingly. Please submit your revised manuscript by Dec 12 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Kind regards, Asli Suner Karakulah, PhD Academic Editor PLOS ONE Journal Requirements: 1. When submitting your revision, we need you to address these additional requirements. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Thank you for stating the following in the Competing Interests section: I have read the journal's policy and the authors of this manuscript have the following competing interests: A.W. and M.H. report personal fees and non-financial support from Roche Diagnostics. A.W. and M.H. report non-financial support from Euroimmun, non-financial support from Viramed, non-financial support from Mikrogen. A.W. and M.H. report grants, non-financial support and other from German Centre for Infection Research DZIF, grants and non-financial support from Government of Bavaria, non-financial support from BMW, non-financial support from Munich Police, nonfinancial support and other from Accenture. A.W. and M.H. report personal fees and nonfinancial support from Dr. Box-Betrobox, non-financial support from Dr. Becker MVZ during the conduct of the study. A.W. is involved in other different patents and companies not in relation to the serology of SARS-CoV-2. A.W. reports personal fees and others from Haeraeus Sensors, nonfinancial support from Bruker Daltonics, all of which are outside the submitted work, and non-related to SARS-CoV-2. The other authors declare that they have no competing interests. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript; or in the decision to publish the results. We note that one or more of the authors are employed by a commercial company. a. Please provide an amended Funding Statement declaring this commercial affiliation, as well as a statement regarding the Role of Funders in your study. If the funding organization did not play a role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript and only provided financial support in the form of authors' salaries and/or research materials, please review your statements relating to the author contributions, and ensure you have specifically and accurately indicated the role(s) that these authors had in your study. You can update author roles in the Author Contributions section of the online submission form. 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We will change the online submission form on your behalf. 3. In the online submission form, you indicated that Koco19: The data that support the findings of this study are available from the KoCo19 collaboration group, but restrictions apply to the availability of these data, which were used under license for the current study, and so are not publicly available. Data are however available from the authors upon reasonable request and with permission of the KoCo19 collaboration group. EpiCov: The second round EpiCov dataset is available for research purpose on CASD (https://www.casd.eu/), after submission to approval of French Ethics and Regulatory Committee procedure (Comité du Secret Statistique, CESREES and CNIL). Access to anonymized individual data underlying the findings may be available before the planned period, on request to the corresponding author, to be submitted to approval of ethics and reglementary Committee for researchers who meet the criteria for access to data. CON-VINCE: The dataset for this manuscript is not publicly available as it is linked to the CON-VINCE Study and its internal regulations. Any requests for accessing the dataset can be directed at con-vince@lih.lu. All data of the manuscript will be provided upon reasonable request and approval by the ethics committee. All PLOS journals now require all data underlying the findings described in their manuscript to be freely available to other researchers, either a. In a public repository, b. Within the manuscript itself, or c. Uploaded as supplementary information. This policy applies to all data except where public deposition would breach compliance with the protocol approved by your research ethics board. If your data cannot be made publicly available for ethical or legal reasons (e.g., public availability would compromise patient privacy), please explain your reasons on resubmission and your exemption request will be escalated for approval. 4. One of the noted authors is a group or consortium "the ORCHESTRA working group". In addition to naming the author group, please list the individual authors and affiliations within this group in the acknowledgments section of your manuscript. Please also indicate clearly a lead author for this group along with a contact email address. 5. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The manuscript by Dr Novelli and colleagues aimed to study the evolution of IgG antibodies to SARS-CoV2 Spike antigen over time. To that end, the authors used three cohorts, from Germany, France and Luxemburg, established in the first half of the year 2020 in the three countries. For their study, they included a subpopulation in each of the three cohorts and tested selected plasma samples with an ELISA assay allowing the detection of IgG to SARS-CoV2 S protein. After testing 65, 599 and 16 samples of the cohorts from Germany, France and Luxemburg, respectively, the authors observed no sero-negativation four months after infection and then a reversion in roughly 1/3 of the patients 6 and 12 months after infection. The authors concluded on the waning of IgG antibodies 6 to 12 months after primary infection in one third of infected persons in their cohorts. The authors addressed here an important issue in the immunity to SARS-CoV2 and its duration. This type of study might also help address the question of herd immunity. The authors are commended for that. The work presents also limitations, some of which mentioned by the authors in the discussion. These include: 1. The role of re-infection in the maintenance of IgG antibody level. This point is important and should be discussed further, especially in the light of what is known on covid-19 in the three countries during the study period. 2. Although the 3 countries are neighbors, political decisions during the early phase of covid-19 were not exactly the same and this might have some incidence on epidemiological situation in the three countries. This should be mentioned in the manuscript. 3. The initial cohorts from the three countries included large sample size. However, in the studied population, the sample size per site is very disequilibrated (16, 65 and 599). Did the authors compared these 3 populations? How comparable were they? If they were not comparable, then it is very risky to draw a general conclusion on antibody dynamics from 3 different population in size and structure. 4. Can the authors indicate the sensitivity and specificity of the ELISA assay used? 5. The authors defined two categories in the ELISA results according to OD ratios: below 0.7, the samples were considered negative and above 1.1, they were considered positive. What about those in between? It is written in the manuscript that samples with OD ration above 0.7 were tested for neutralization. How many of those with OD ratio between 0.7 and 1.1 were positive in neutralization (i.e. as per authors’ definition with a titer above 40)? This should be helpful to readers and should be presented. Reviewer #2: Waning of anti-SARS-CoV-2 antibodies after the first wave of the COVID-19 pandemic in 2020: a 12-month-evaluation in three population-based European studies In this study, the decrease in antibody levels in unvaccinated Anti-S IgG seropositive individuals from three different centers in Europe was investigated as a retrospective cohort study. The inclusion of Anti-S IgG reactive individuals in the early phase of the COVID-19 Pandemic (in 2020) may be valuable in terms of understanding the effect of natural infection on antibody kinetics in the absence of the vaccine factor. It is appropriate to publish after the necessary major and minor revisions. Major 1- The principled test used for the virus neutralization test (VNT) should be specified in the Material - Method section. In this context, PRNT (Plaque Reduction Neutralization Test) or Surrogate Neutralization Tests can be used [1]. • In addition, the diagnostic reference values of the neutralization test results should be specified according to the relevant method used (positive and negative limit values). 2- Has a power analysis been performed to support the sample power? If so, it should be stated in the Material-Method section. 3- The variant that was effective at the beginning of the COVID-19 pandemic was D614G. Later, the Alpha (B.1.1.7.) variant was effective. In this context, the development of reinfection in the cases included in the study should be taken into consideration and explained. 4- The reason why Anti-N (Nucleocapsid-specific antibody), which is an important antibody in the post-infection situation, is not preferred instead of Anti-S measurement after SARS-CoV-2 infection should be explained. 5- In the results of the study, it was stated that seroreversion was observed more frequently in the 30-39 age group compared to the 15-29 age group and that it was statistically significant (p<0.001). At this point, it was stated in the discussion section that the 30-39 age group is more socioactive as a possible reason underlying the more frequent seronegativity observed compared to the older age group. This explanation may be possible due to the possibility of early infection. However, in line with basic immunological phenomena, there is more antibody production in young individuals [2, 3]. For example, while 4000 IU/mL of Antibody can be formed in a young individual, 2000 IU/mL of antibody can be formed in an older individual. In this case, it is interesting that a young individual may have early infection but falls into seronegativity earlier or more frequently than an older individual within the elapsed time period. This situation should be clarified from an immunological perspective and further explanations should be provided. 6- As a result, seroreversion was investigated in the cases included in the study in line with decreasing antibodies. Although scientific inferences have been examined very well at this point, recommendations should also be shared in terms of public health. What is recommended for individuals who are seronegative within a certain period of time? Minor 1- Virus neutralization test principle and commercial kit identification, if used, should be provided. References 1- Dinç, H. Ö., Demirci, M., Özdemir, Y. E., Sirekbasan, S., Aktaş, A. N., Karaali, R., ... & Kocazeybek, B. (2022). Anti-SARS-CoV-2 IgG and neutralizing antibody levels in patients with past COVID-19 infection: a longitudinal study. Balkan Medical Journal, 39(3), 172. 2- Castellao Tavares, S. M. Q. M., Bravo Junior, W. L., & Alves Leite, J. L. (2015). Analyze the levels of immunoglobulins IgG and IgM in elderly and youngs. IntJ Immunol Immunother, 1 (1). 3- Mattos, M. S., Vandendriessche, S., Waisman, A., & Marques, P. E. (2024). The immunology of B-1 cells: from development to aging. Immunity & Aging, 21(1), 54. Geri bildirim gönder Yan paneller Geçmiş Kaydedilenler ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy . Reviewer #1: No Reviewer #2: Yes: Bekir Kocazeybek ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org . Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Waning of anti-SARS-CoV-2 antibodies after the first wave of the COVID-19 pandemic in 2020: a 12-month-evaluation in three population-based European studies PONE-D-24-29510R1 Dear Dr. Novelli, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Asli Suner Karakulah, PhD Academic Editor PLOS ONE Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: (No Response) Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: (No Response) Reviewer #2: The authors described waning in anti-SARS-CoV-2 IgG in adult general populations infected during the first wave of the COVID-19 pandemic in 2020 across : From population-based cohorts, anti-S IgG levels remained stable during the first 4 months following SARS-CoV-2 infection. They concluded that mMost of the decay occurred afterward; nearly one-third of people seroreverted 6 and 12 months later. Low IgG levels and seroneutralization negativity were independent predictors of seroreversion. All my comments are answered and applied to the text. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy . Reviewer #1: No Reviewer #2: Yes: Bekir Kocazeybek ********** |
| Formally Accepted |
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PONE-D-24-29510R1 PLOS ONE Dear Dr. Novelli, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Asli Suner Karakulah Academic Editor PLOS ONE |
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