Peer Review History
| Original SubmissionMay 10, 2024 |
|---|
|
PONE-D-24-18364Physical activity and diet pattern do not mitigate C-reactive protein increases associated with oral contraceptive usePLOS ONE Dear Dr. Trexler, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Aug 30 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols . Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols . We look forward to receiving your revised manuscript. Kind regards, Samiullah Khan, Ph. D Academic Editor PLOS ONE Journal requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and Additional Editor Comments : Dear author, Whole manuscript should be revised keeping in view all the comments of both reviewers. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Thank you for this outstanding piece of work. The analysis and insights on this paper provide some key details on inflammation status in OCP users. The main finding of CRP values in OCP users not being decoupled from other markers of inflammation will be of interest to many in this field. I believe that this article will likely serve as the foundation for future research that seeks to understand the effects of this systemic inflammation on these women's health. I have some minor comments that I would like the authors to address prior to the paper's acceptance. 1) Line 87-89: I felt that the sentence about possible mechanisms that could increase CRP levels in OCP users could do with some work. In this sentence 'but' could possibly be replaced with 'of which'. 2) Line 276: should 'oral contraceptives' be presented as OC as per the rest of the article? Reviewer #2: This study investigated the influence of body mass index, self-reported physical activity level, dietary inflammatory index, and oral contractive use on C-reactive protein levels. It is a valuable study which provides further insight into the role of OC use in modulating CRP levels. The large sample size is a strength, however the reliance on retrospective and self-report data with limited detail to categorize participants is a limitation. Suggested changes below. Introduction -Very nice introduction! CRP is clearly introduced and its significance as an inflammatory biomarker explained. The prior research investigating oral contraceptive use on CRP concentrations has been summarized, and the ‘gaps’ and remaining questions have been clearly elucidated. -However, it is stated that it is unclear “if these elevations [in CRP] can be mitigated or attenuated by physical activity, low BMI, or anti-inflammatory diet patterns”, yet you have discussed a study (Larsen et al 2020) showing significantly elevated CRP levels even in Olympic athletes with a low BMI (19.5), which seems to suggest that a low-normal BMI and high levels of PA will not attenuate CRP levels in OC users – this finding (also observed in other studies) needs further consideration/discussion in the Introduction to add clarity surrounding the aims and hypotheses of this research Methods -Line 128: were all OC users included? What about those on progestin-only pills? Was length of OC use captured? -Line 157: it is stated that “first generation oral contraceptives are rarely used in the present day” however data was captured ~20 years ago. Implications of this should be discussed as a limitation -Line 161: having a period every 2 months is not considered within the range of a regular MC. Thus, it is likely that subjects with MC dysfunction (and thus, a different hormonal profile to those with a regular MC) were captured in the study cohort. This also needs to be considered as a limitation -Depending on responses to questions above, many different hormonal profiles could have been captured in the study i.e., those with regular MC, MC disorders, combined OC users, progestin only OC users… clarification and more detail is required around participant inclusion/exclusion criteria and the limitations thereof -Were CRP samples collected at a specific phase of the MC or OC use (active or inactive pills)? The Results are clearly presented – well done Discussion: -Why are only 3 of the 5 hypothesis presented in Para 1 of the Discussion? The numbers don’t align to those previously used either (1-3 vs 1-5). This is confusing – please re-write to align discussion with other manuscript sections when discussion hypotheses 1-5 -Otherwise, an excellent Discussion that explores the current findings with consideration of previous research without overstating the data. Limitations and considerations for future research are presented, limitations could be expanded as per suggestions above. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy . Reviewer #1: Yes: Claire Badenhorst Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org . Please note that Supporting Information files do not need this step. |
| Revision 1 |
|
PONE-D-24-18364R1Physical activity and diet pattern do not mitigate C-reactive protein increases associated with oral contraceptive usePLOS ONE Dear Dr. Trexler Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Oct 12 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols . Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols . We look forward to receiving your revised manuscript. Kind regards, Samiullah Khan, Ph. D Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. Additional Editor Comments: Dear Editor, The changes have substantially improved the presentation of the work. The reviewer #1 had some additional comments that I would like the authors to consider and address prior to the paper being accepted for publication. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Thank you to the authors for their edits to their paper. The changes have substantially improved the presentation of the work. I do have some additional comments that I would like the authors to consider and address prior to the paper being accepted for publication. I hope that the authors find these helpful. Comments: 1) It is noted that the authors define the abbreviations in the abstract of the paper. However, in the introduction, the authors again define the abbreviations CPR and OC but do not redefine PA, BMI or DII. This may need to be reviewed. 2) Should line 86 state ‘that physical and body composition are insufficient for mitigating systemic inflammation’? The addition of body composition would align with the information provided in the previous paragraph. 3) Line 90: can the authors check and clarify if it is ‘both’ systemic inflammation and localised effects or is it ‘either’? 4) When referring to synthetic estrogen the authors may consider using ethylestradiol vs estradiol (lines 91 ,94). This change in terminology may also be considered and edited throughout the paper. 5) Line 113: I am not sure why the authors have selected their hypotheses based on OC- induced elevations not being associated with systemic inflammation. The information provided by the authors would suggest that the previous evidence not in favour of systemic inflammation is a) done in small homogenous samples (line 83) or is equivocal (line 96). The authors may need to consider a revision of their statement that justifies why hypothesis 2 was presented. 6) Line 155: should this statement include type and duration? While the authors have noted that less than 1% of US women may use progestin-only pills, there are different types (mono-,bi-, and tri-phasic OCPs) that women in the study may be using. 7) Line 165: can the authors confirm if this statement of menstrual cycle status was in the later 4 years of the NHANES data? The previous section outlines differences between the data collection periods and the information here would be very helpful to the reader. 8) Why is information on HRT presented between lines 170-173? Would it not be better suited to the paragraph above which specifically focuses on OCs data collection from the NHANES survey? 9) Line 177: will need to be edited and have ‘menstrual cycle phases removed’. If an individual is using an OC then they do not have a menstrual cycle they will only have active and pill-free phases. 10) Physical activity’s abbreviation was defined in the abstract, however, there is inconsistent use of this abbreviation throughout the article. The authors may need to review this. Lines where the abbreviation has not been used have been identified: 86, 387, 391, 401, 411, and 490. Reviewer #2: The authors have made all suggested comments and the manuscript has been significantly improved as a result, well done. This paper will hopefully prompt further research into the implications of elevated CRP concentrations amongst OC users - an important topic given the high prevalence of OC use amongst women. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy . Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org . Please note that Supporting Information files do not need this step. |
| Revision 2 |
|
Physical activity and diet pattern do not mitigate C-reactive protein increases associated with oral contraceptive use PONE-D-24-18364R2 Dear Dr Eric Trexler,., We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Samiullah Khan, Ph. D Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Thank you for completing the additional edits to this paper. It is a great piece of work and I look forward to seeing how it is received. One final edit that may have been missed is the use of CRP abbreviation on line 332. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy . Reviewer #1: Yes: Claire Badenhorst ********** |
| Formally Accepted |
|
PONE-D-24-18364R2 PLOS ONE Dear Dr. Trexler, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Samiullah Khan Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .