Peer Review History
| Original SubmissionNovember 6, 2024 |
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PONE-D-24-50294Identification of Diabetic Retinopathy lesions in Fundus Images by Integrating CNN and Vision Mamba ModelsPLOS ONE Dear Dr. Wang, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jan 22 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.
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[Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: N/A Reviewer #2: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: No ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This article introduces a novel deep learning model that integrates convolutional neural networks (CNNs) with Vision Mamba models to accurately detect and classify diabetic retinopathy lesions in fundus images. The proposed methodology demonstrates superior performance compared to advanced algorithms on publicly available datasets, making it a valuable tool in therapeutic applications. The manuscript is engaging, well-structured, and well-written. To further enhance its quality and facilitate processing, the following suggestions are provided: 1.Elaborate on the specific limitations of previous studies that the proposed model addresses. This will clearly position the current work as a significant contribution to the field. 2.To provide a more comprehensive overview of the research landscape, incorporate recent related works (2021–2024) into the literature review. Including the following works would be beneficial: https://www.sciencedirect.com/science/article/abs/pii/S1746809424008358, https://ieeexplore.ieee.org/abstract/document/10559800 3.The statement, "The suggested Vision Mamba component has equivalent power to ViT while requiring substantially less computational complexity," requires further elaboration. Include a detailed explanation and supporting information to substantiate this claim. 4. Enhance the clarity and impact of findings by including graphical representations such as accuracy and loss curves for both training and testing phases. Additionally, provide fundus image with classifications results based on retinopathy grades. 5. Write the literature survey in past tense to maintain a consistent and professional tone. 6. The statement, “An end-to-end training approach was used to train the proposed model by partitioning the complete OATH dataset into a training set (80%) and a testing set (20%),” lacks clarity regarding the OATH dataset. The authors should describe this dataset in detail, as only RFMiD 2.0, APTOS2019, and Messidor datasets are mentioned elsewhere in the manuscript. 7.Include a comparison of the proposed method with recent works (2021–2024) to better contextualize its contributions. 8. The discussion of results should be more comprehensive. Include deeper insights, interpretations, and implications to strengthen the manuscript's impact. 9. Revise and enhance the quality of the figures. Reviewer #2: Major Concerns: 1. The manuscript claims to present a novel framework combining CNN and Vision Mamba models, but the explanation of the methodology is vague and lacks sufficient detail. The Vision Mamba model's specifics and how it integrates with CNNs are not sufficiently described or justified. 2. The authors fail to provide clear novelty over existing state-of-the-art models. Many components, such as the use of Inception-ResNet and bidirectional state-space mechanisms, appear to be incremental rather than novel advancements. 3. The dataset usage and preprocessing steps are inadequately described. For example, the partitioning of datasets for training and testing lacks clarity on whether overlapping patients were excluded to prevent data leakage. 4. Hyperparameter tuning details and experimental controls to ensure reproducibility are insufficiently detailed. 5. The manuscript does not adequately address the potential for bias introduced by the imbalance in diabetic retinopathy grades across datasets. 6. The results are compared with an extensive list of methods, but the comparisons lack statistical rigor. There is no mention of significance testing or confidence intervals to substantiate claims of superior performance. 7. The choice of metrics, while standard, does not include sufficient consideration for imbalanced datasets beyond weighted metrics. 8. Figures such as the framework diagram (Fig. 1) are not sufficiently annotated, making it difficult to understand the pipeline without referring extensively to the text. 9. Confusion matrices presented are inadequately analyzed, with no discussion of patterns in misclassification or how these errors relate to clinical significance. 10. The discussion section lacks depth in interpreting the findings. For example, the authors do not explore the implications of their model's limitations in real-world settings or address the constraints of high computational costs for deploying Vision Mamba in clinical environments. 11. Several claims, such as the "equivalence of Vision Mamba to ViT with lower computational cost," are made without empirical evidence or references. 12. The ethics statement is marked as "N/A," which is inappropriate for a study involving human-related medical images. Ethical approval for dataset use should be explicitly stated. 13. The authors claim that datasets are publicly available but do not clarify their usage rights or ensure compliance with data-sharing standards. Minor Concerns: The manuscript contains numerous grammatical errors and awkward phrasing, which detracts from readability. • Original: "The proposed framework achieving state-of-the-art performance in diabetic retinopathy detection." Issue: Missing verb ("is achieving" or "achieves") makes the sentence incomplete. Revised: "The proposed framework achieves state-of-the-art performance in diabetic retinopathy detection." • Original: "The dataset used for training were preprocessed to remove noise." Issue: Subject-verb agreement error ("dataset" is singular but "were" is plural). Revised: "The dataset used for training was preprocessed to remove noise." • Original: "These results indicates the superiority of our model, as the robustness is validated." Issue: Incorrect subject-verb agreement ("results" is plural but "indicates" is singular). Revised: "These results indicate the superiority of our model, as its robustness is validated." • Original: "In clinical setup, the proposed method can be easily implemented for its efficiency." Issue: Awkward phrasing ("in clinical setup" should be "in a clinical setup"). Revised: "In a clinical setup, the proposed method can be easily implemented due to its efficiency." And so on… ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. 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| Revision 1 |
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Identification of Diabetic Retinopathy lesions in Fundus Images by Integrating CNN and Vision Mamba Models PONE-D-24-50294R1 Dear Dr. Wang, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. 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If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The author has addressed all the previously suggested comments. Therefore, I recommend this article for publication. Reviewer #2: citing these reference paper would be beneficial for https://doi.org/10.3389/fcell.2024.1484880 https://doi.org/10.1371/journal.pone.0315477 10.1016/j.heliyon.2024.e39745 10.32604/cmc.2023.036956 https://doi.org/10.3390/app142311327 ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** |
| Formally Accepted |
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PONE-D-24-50294R1 PLOS ONE Dear Dr. Wang, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Professor Panos Liatsis Academic Editor PLOS ONE |
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