Peer Review History
| Original SubmissionAugust 21, 2024 |
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PONE-D-24-36174Citrus Diseases Detection Using Innovative Deep Learning Approach and Hybrid Meta-HeuristicPLOS ONE Dear Dr. Syafrudin, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. We have received feedback from our reviewers, and after careful consideration, we have decided to request major revisions. The reviewers provided valuable insights and suggestions, highlighting areas that require further development. We encourage you to address their comments thoroughly to enhance the quality of your work. Additionally, the reviewers suggested several references that may be beneficial to your manuscript. Please consider incorporating these references in the revised version, provided they align with the scope and objectives of your study. We look forward to receiving your revised manuscript. Please submit your revised manuscript by Oct 27 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Hirenkumar Kantilal Mewada Academic Editor PLOS ONE Journal requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please note that PLOS ONE has spec6ific guidelines on code sharing for submissions in which author-generated code underpins the findings in the manuscript. In these cases, all author-generated code must be made available without restrictions upon publication of the work. Please review our guidelines at https://journals.plos.org/plosone/s/materials-and-software-sharing#loc-sharing-code and ensure that your code is shared in a way that follows best practice and facilitates reproducibility and reuse. 3. Thank you for stating the following financial disclosure: [This work was supported by Institute of Information & communications Technology Planning & Evaluation (IITP) grant funded by the Korea government(MSIT) (No.1711160571, MLOps Platform for Machine learning pipeline automation.)]. Please state what role the funders took in the study. If the funders had no role, please state: "The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript." If this statement is not correct you must amend it as needed. Please include this amended Role of Funder statement in your cover letter; we will change the online submission form on your behalf. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: No Reviewer #2: No ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The study's topic is attractive; however, it requires significant modifications. The authors need to revise specific sections with greater attention. - Lines (47-48), the full names of all models should be provided upon their first mention. - Lines (35, 37), CV should be written out in full initially, with no need to repeat the Literature Review. - What is the difference between 'CV' mentioned in the introduction and 'convolutional neural networks (CV)' in line 103? Please verify. - Figure 1 needs to be zoomed in to clearly display its details. - Please insert numbering for the manuscript headings, according to the journal guidelines Proposed Methodology, Data Augmentation, Deep Feature Extraction, Modified DenseNet201…………… etc. - Table 1. Procedure for constructing flames in the optimization, and then “Procedure for constructing flames in the optimization:” Do not repeat the rewrite again? - The authors mentioned 'Results and Discussions' before 'Experimental Setup,' which is not appropriate. Please move the 'Experimental Setup' section to 'Materials and Methods.' - Table 2, there is no need to repeat the symbols again, such as 'F1-Score' and 'Accuracy'. - “Results on Hybrid Dataset”, revise the heading to ensure it aligns with this section. - Figures 3-9 have low resolution; please improve it. - Table 5: Why isn't the same style used as in Tables 6, 7, and 8? Please add % to the first row and remove it from the other fields—there's no need to repeat it. Please fix this issue throughout the manuscript. - The manuscript contains too many confusion matrices. Limit them to two and include the learning curve for the superior model to emphasize the novelty. - The discussion in the paper is weak; please include more previous studies, according to the lasted studies - https://doi.org/10.1016/j.dib.2024.110713 - https://doi.org/10.3390/plants13010135 - https://doi.org/10.1007/s11760-024-03452-2 - https://doi.org/10.1016/j.compag.2024.108907 - https://doi.org/10.1016/j.compag.2022.107453 - Line (362), Here are the potential areas for future work to…….., Please rewrite this sentence, as it is not ideal to start with 'Here'. - This paper requires significant revisions before it can be considered complete. Therefore, I recommend a major revision. Thank you. Reviewer #2: Reviewers Comments A major revision is being suggested. Following are the point-to-point comments that need to be addressed for further review: 1. Abstract: The motivation of the research is not clear. It is suggested that the authors include a clear motivation statement in the abstract. Also, one sentence presenting the major findings with quantitative support needs to be included as the second sentence from the end of the abstract. 2. Introduction: This is written very poorly. The authors are suggested to merge the Literature review with the introduction to correctly identify the research gap and formulate the objectives in line with the research gap. 3. Line 130: The authors have mentioned that this study utilizes three datasets. However, no details related to the data set are provided. Also, the author has not declared that the dataset is public or private, developed by authors, or accessed from other sources. The details must be stated, and appropriate citations must be provided. 4. Figure 3, Figure 6, figure 7, figure 8, figure 9: The quality of the figure must be enhanced. The current figure quality is blurry and difficult to read. 5. Figure 10, Figure 11, and Figure 12 present the same quantitative values throughout the graph. Hence, it is suggested that the authors remove the table below and make good-quality plots for better representation and understanding. 6. Line 319 to 347, the Authors discussed the obtained results, and one table has been appended below with the title State of the art comparisons. However, the critical comparison and reasoning behind the obtained results are missing in the discussion section. The authors are expected to discuss the obtained results and compare them with the existing results to explain the reasoning behind the presented phenomenon. Hence, it was suggested that the discussion be enhanced as suggested. 7. The conclusions must be proper and in alignment with the objectives. Also, it is expected that authors must present major findings with quantitative support. The authors obtained multiple parameters but only presented parameter accuracy and provided it for the three datasets. No proper and critical write-up is expected here. Hence, the authors are advised to rewrite the conclusion in a maximum of 200 words and include 1-2 sentences at the end that relate to the future direction of the work. 8. References: The authors are advised to include more recent references, particularly from journals such as Elsevier, Springer, PLOS ONE, etc. Currently, no articles from 2024 have been cited. Only two articles from 2023 and one from 2022 are referenced. This suggests either an inadequate literature survey or an outdated research domain. It is strongly recommended that the authors incorporate recent citations to ensure the study's relevance. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Dr. Narendra Khatri ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Citrus Diseases Detection Using Innovative Deep Learning Approach and Hybrid Meta-Heuristic PONE-D-24-36174R1 Dear Dr. Syafrudin, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Hirenkumar Kantilal Mewada Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: N/A Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: After the modifications, the manuscript has been greatly improved and is now ready for acceptance by the journal. Thank you Reviewer #2: The authors have revised the manuscript in accordance with the provided comments. Therefore, the manuscript is now suitable for acceptance without requiring further review. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Narendra Khatri ********** |
| Formally Accepted |
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PONE-D-24-36174R1 PLOS ONE Dear Dr. Syafrudin, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Hirenkumar Kantilal Mewada Academic Editor PLOS ONE |
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