Peer Review History
| Original SubmissionDecember 4, 2024 |
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PONE-D-24-53401Self-reported health, neuropsychological tests and biomarkers in fully recovered COVID-19 patients vs patients with post-COVID cognitive symptoms: a pilot studyPLOS ONE Dear Dr. Arnetz, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Apr 18 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Regencia, Ph.D. Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Thank you for stating in your Funding Statement: “This study was financially supported by a grant from the Spectrum Health Foundation, principal investigators AA and BBA. The funders did not play any role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript.” Please provide an amended statement that declares *all* the funding or sources of support (whether external or internal to your organization) received during this study, as detailed online in our guide for authors at http://journals.plos.org/plosone/s/submit-now. Please also include the statement “There was no additional external funding received for this study.” in your updated Funding Statement. Please include your amended Funding Statement within your cover letter. We will change the online submission form on your behalf. 3. Thank you for stating the following in the Acknowledgments Section of your manuscript: “The authors extend their gratitude to the patients who participated in the study and to John Beck, BS for conducting the biomarker analysis. This study was financially supported by a grant from the Spectrum Health Foundation (Grant nr. FDN 35911-2020-601).” We note that you have provided funding information that is currently declared in your Funding Statement. However, funding information should not appear in the Acknowledgments section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: “This study was financially supported by a grant from the Spectrum Health Foundation, principal investigators AA and BBA. The funders did not play any role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript.” Please include your amended statements within your cover letter; we will change the online submission form on your behalf. 4. When completing the data availability statement of the submission form, you indicated that you will make your data available on acceptance. We strongly recommend all authors decide on a data sharing plan before acceptance, as the process can be lengthy and hold up publication timelines. Please note that, though access restrictions are acceptable now, your entire data will need to be made freely accessible if your manuscript is accepted for publication. This policy applies to all data except where public deposition would breach compliance with the protocol approved by your research ethics board. If you are unable to adhere to our open data policy, please kindly revise your statement to explain your reasoning and we will seek the editor's input on an exemption. Please be assured that, once you have provided your new statement, the assessment of your exemption will not hold up the peer review process. 5. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors present a very insightful pilot study on the difference in mood, quality of life, and neuro-cognitive scores, and biomarkers between COVID-19 survivors with persistent cognitive symptoms and fully-recovered COVID-19 patients using the case-control design. The pilot study contributes additional exploration on the post-COVID-19 phenomenon to the existing published studies by recruiting laboratory-confirmed COVID-19 survivors as controls and by including both cognitive batteries and biomarkers as outcome measures. I do have some minor recommendations for the authors: 1. The difference between the ‘fully recovered COVID-19 patients’ and ‘patients with post-COVID cognitive symptoms’ groups is very arbitrary and highly reliant on single self-report. The authors are enjoined to specify whether they use the United Kingdom National Institute for Health and Care Excellence clinical case definition of post-COVID-19 condition or the World Health Organization 2021 Delphi Study case definition (accessible via https://iris.who.int/bitstream/handle/10665/345824/WHO-2019-nCoV-Post-COVID-19-condition-Clinical-case-definition-2021.1-eng.pdf?sequence=1 ). 2. It would be ideal to relocate the statement on line 130 “The sample was comprised of a total of 17…” to the Results section. The authors are also encouraged to at least declare if there was an attempt to reach a specific sample size for the pilot study involving continuous variables- the flat rule or the stepped rule of sample size determination for pilot studies. 3. It would be prudent to state why the other biomarkers mentioned in the review - GFAP, IL 12, IL 17, CRP, and TNF alpha - were not included in the pilot study. 4. The authors are enjoined to use the Vancouver citation style wherein the in-text citation entails a superscript number after the period in compliance with the PLOS ONE submission guidelines. Reviewer #2: The study fills important knowledge gaps in the elucidation of COVID-19 as a disease. The novelty this study brings is the rigorous comparison between prior lab-confirmed COVID-19 patients that have recovered (i.e., asymptomatic) versus lab-confirmed COVID-19 patients that have developed cognitive symptoms at least 6 months since diagnosis. The comparison spans cognitive and psychological function, perceptions of functional status and quality of life, and serum biomarkers of stress, inflammation, and neuroplasticity. The main weakness is the limited sample size. Major - In lines 74–76, the authors talk about post-COVID cognitive symptoms having higher frequency among individuals who had mild infection and who have a history of cognitive difficulties and depressive disorder. However, in the methodology, the authors do not include information on whether the cohort they recruited did have these factors. Knowing this clinical information is important as these conditions could confound the analysis. For example, a person who might have history of cognitive difficulties may fare worse in the neurocognitive function tests. How about vaccination history? - For study participants, did the authors set any exclusion criteria? Since the analysis assesses cognitive and psychological functioning, quality of life, and serum biomarkers, confounders such as history of neurological and psychological conditions, any disabilities, or any immunological conditions might impact the data. Minor - In the introduction (line 56), the authors define Post-COVID conditions (PCC) as a syndrome characterized by symptoms that extend well beyond the initial recovery period. The statement sounds arbitrary. Although the definition has not been standardized yet, perhaps the authors can include the usual time duration of recovery to make the statement less abstract and more clear. - How is “fully recovered patients” qualified? Since assessing recovery in this study relies on self report of symptoms, it is important to enumerate the review of systems asked (even just as supplemental information) so readers might be able to assess how comprehensive the assessment was. - Lines 111-113: What could be the reason why in ref 15, patients with PCC cognitive complaints did not differ from healthy controls on neurocognitive testing but tested WORSE than PCC without cognitive complaints? - The authors did not indicate the details on blinding and whether it was done in this study. - Lines 290-291: The authors should be careful with the use of the word “sustained” to describe the attenuation in neuroplastic activity especially since the data is not longitudinal. - Lines 291–292: What is the link between neuroplasticity and cognition? Is a decrease in neuroplasticity linked with cognitive problems? Which specific aspect of cognition has established links in literature? Perhaps the authors can include a concise statement on this. - Line 301: In the discussion by the authors, what may explain the discordance on IL-6 findings between the Lai et al. and Queiroz et al. studies? - Lines 164–165: Consider reviewing the sentence for typographical errors. - Line 191: Consider reviewing the case of the phrase “pro-inflammatory Index” (common vs. proper noun; consistency throughout the text) - Lines 254-255: Consider reviewing the sentence, particularly on parallelism (“examine and compare self-reported and objective measures in PCC patients with cognitive complaints with…”) - Line 345-347: Consider putting the comma after the initialism AEO. Also consider reviewing the sentence. The authors are requested to clarify the sentence: Is it the AEO that is diminished in CFS patients? - Line 349-351: Consider using an em dash instead of a hyphen. - Line 354: The authors should be consistent in their use of the phrase “long COVID” and not hyphenate it. Also in line 358: “neuroinflammatory” ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy . Reviewer #1: No Reviewer #2: Yes: Ben Anthony A. Lopez, MD, PhD ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org . Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Self-reported health, neuropsychological tests and biomarkers in fully recovered COVID-19 patients vs patients with post-COVID cognitive symptoms: a pilot study PONE-D-24-53401R1 Dear Dr. Arnetz, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Zypher Jude G. Regencia, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-24-53401R1 PLOS ONE Dear Dr. Arnetz, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Zypher Jude G. Regencia Academic Editor PLOS ONE |
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