Peer Review History
| Original SubmissionJune 5, 2024 |
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PONE-D-24-22915A drop dispenser for simplifying on-farm detection of foodborne pathogensPLOS ONE Dear Dr. Verma, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Oct 06 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Kind regards, Enoch Aninagyei, PhD Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Thank you for stating the following financial disclosure: "The work presented here is funded by CPS AWARD NUMBER: 2021CPS12, CDF Agreement No: 20-0001-054-SF USDA Cooperative Agreement No. USDA-AMS-TM-SCBGP-G-20-0003. Any opinions, findings, conclusions, or recommendations expressed in this publication or audiovisual are those of the author(s) and do not necessarily reflect the views of The Center for Produce Safety, the California Department of Food and Agriculture, or the Agricultural Marketing Service of the U.S. Department of Agriculture (USDA). The work upon which this project entitled “Field evaluation of microfluidic paper-based analytical devices for microbial source tracking” was funded in whole or in part through a subrecipient grant awarded to The Center for Produce Safety through the California Department of Food and Agriculture 2020 Specialty Crop Block Grant Program and the USDA’s Agricultural Marketing Service." Please state what role the funders took in the study. If the funders had no role, please state: "The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript." If this statement is not correct you must amend it as needed. Please include this amended Role of Funder statement in your cover letter; we will change the online submission form on your behalf. 3. Thank you for stating the following in the Competing Interests section: "I have read the journal's policy and the authors of this manuscript have the following competing interests: M.S.V. has an interest in Krishi Inc., which is a startup that is interested in commercializing technologies developed here. This work was not funded by Krishi Inc. " Please confirm that this does not alter your adherence to all PLOS ONE policies on sharing data and materials, by including the following statement: "This does not alter our adherence to PLOS ONE policies on sharing data and materials.” (as detailed online in our guide for authors http://journals.plos.org/plosone/s/competing-interests). If there are restrictions on sharing of data and/or materials, please state these. Please note that we cannot proceed with consideration of your article until this information has been declared. Please include your updated Competing Interests statement in your cover letter; we will change the online submission form on your behalf. 4. We noted in your submission details that a portion of your manuscript may have been presented or published elsewhere. [The manuscript has been deposited to bioRxiv as a pre-print.] Please clarify whether this [conference proceeding or publication] was peer-reviewed and formally published. If this work was previously peer-reviewed and published, in the cover letter please provide the reason that this work does not constitute dual publication and should be included in the current manuscript. 5. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The manuscript titled, “A drop dispenser for simplifying on-farm detection of foodborne pathogens” discusses the fabrication of drop dispensers for efficient and cost-effective nucleic acid testing while delivering precise sample amounts to biosensor’s reaction sites for detecting food-borne pathogens. This study utilizes loop-mediated isothermal amplification (LAMP) to detect Ecoli. The introduction of the manuscript makes a strong case for the need and applicability of the method. The results demonstrate a proof of concept in terms of use in the field by non-specialists. The one limitation is that the manuscript does not discuss how the dispenser performs over time with repeated usage. Are desired volumes dispensed by the method still accurate over time? This should be addressed in the comments. I recommend the manuscript for publication once this minor comment is addressed. Reviewer #2: The manuscript entitled A drop dispenser for simplifying on-farm detection of foodborne pathogens by Mohsen Ranjbaran in which the authors aimed to developed drop dispensers using 3D printing and a hydrophilic surface chemistry treatment to generate precise drops (DNA/bacterial samples) of a few micro-liters (∼20 to ∼33 μL). The idea of the manuscript is good and can be accepted for publication but after some revision. The authors should revise their manuscript according to the following comments. Abstract rewrite it and make it more coherent. Introduction Should be revised and updated. Latest literature should be added, recent references should be cited. Discussion The authors have mentioned listeria but they havent mentioned more detail about it. As listeria is a food born pathogen and very harmful, the authors should add at least a paragraph on it. The following two articles are the best to be read and cited for writing the new paragraph. https://doi.org/10.1080/19476337.2023.2296006 https://doi.org/10.31083/j.fbl2905176. Figures quality should be improved. Where is the conclusion of the study? Limitation and future recommendation should also be added as a separate paragraph. Reviewer #3: The current study outlines the development of a drop dispenser for application in point-of-care detection of food borne pathogens in the field. Overall, the report is thorough and well-written, with plenty of optimization done to develop a robust device and thoughtful discussion of the state of the field. This study and device would be very helpful to others in the area. Major Notes - There needs to be some more discussion of how well the device would function in the field. Further, are there any obvious limitations and potential future steps to improve them? - For instance, currently the dispenser works to detect 8e6 bacterial cells per mL - is this a reasonable LOD for POC E Coli detection? If not, how could the device be improved to get there - I have also highlighted several ways to potentially improve the data presentation by moving numbers from tables to visually comprehensible plots and heat maps. Also, since the report currently only has two figures in the main text, I’d suggest moving some key supplementary figures (Fig S4 and 5 for eg) to the main text since they include important results that supported the development of the device. Minor notes - Please order figures and supplemental figures in the order that they are cited in the text. Currently, Figure S1 for example is cited after Figures S4 and S5 - Table 1: Currently the text makes it seems like the devices were storing liquid over 35 days with some dropping at the indicated time points. Would the devices ever realistically store field samples for that length of time in the POC setting? - If so, are there potential improvements that can be made to the device in the future to limit the liquid leaking issue after day 28? - If not, what’s a more reasonable storage timeline in the field? Please add to discussion - Table 1: I’d suggest converting this table to a figure to make it easier to interpret visually - Also, how many drops were analyzed to determine the error? Please include either individual markers if less than five or error bars to demonstrate the spread of results graphically - In general, please add the numbers of drops analyzed to determine the error in all figure and table captions along with the methods - I’d also suggest converting Tables 4 and 5 to heatmaps for better visual presentation - Figure 2: the text states that various factors were tested but we only see data for alpha and theta (angle of the capillary tube?) with no in-text discussion for theta. Please add a statement defining what theta is and what impact even if none on the drop volume. Further, either include data for volume of the dispensing cylinder, diameter of the capillary tube etc. or don’t mention them as factors tested at all - Figure S3: please plot this numbers instead of listing them - Figure S6a-c: all captions say “replicate 1”. Are they supposed to say replicate 2 or 3? - Where were the primer sequences for the LAMP reaction obtained from? And what vendor did the authors use to synthesize the primers? Please include in Methods - Discussion line 410-411: here the authors state that “Based on our results, our devices worked better than the available commercial drop dispensers in terms of drop reproducibility and application simplicity.” If the authors are referring to results in Figure S1, they need to perform statistical significance testing to conclusively state of their device outperformed the others tested. Further, since “application simplicity” is a subjective metric, I would not include it here and rely on other text in the Discussion to make that point. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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A drop dispenser for simplifying on-farm detection of foodborne pathogens PONE-D-24-22915R1 Dear Dr. Mohit Verma, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Enoch Aninagyei, PhD Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #4: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #4: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #4: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #4: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #4: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #4: The paper is well written and the objectives are clear. The paper deals with the fabrication of dispensers made by a 3D printing process. The dispenser, developed during course of work, was compared with commercially available ones. Those developed here were less variable in volumes dispensed than were commercial ones used for comparison . This was attributed to the use of plasma and peg treatment which made the tips hydrophobic and the insides hydrophilic. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #4: No ********** |
| Formally Accepted |
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PONE-D-24-22915R1 PLOS ONE Dear Dr. Verma, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr Enoch Aninagyei Academic Editor PLOS ONE |
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