Peer Review History
| Original SubmissionAugust 6, 2024 |
|---|
|
-->PONE-D-24-32691-->-->EVs Therapy for Cisplatin-Induced Testicular Tissue Toxicity-->-->PLOS ONE Dear Dr. TOZAK YILDIZ, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Oct 19 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:-->
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols . Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols . We look forward to receiving your revised manuscript. Kind regards, Roland Eghoghosoa Akhigbe Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. We note that your Data Availability Statement is currently as follows: "All relevant data are within the manuscript and its Supporting Information files." Please confirm at this time whether or not your submission contains all raw data required to replicate the results of your study. Authors must share the “minimal data set” for their submission. PLOS defines the minimal data set to consist of the data required to replicate all study findings reported in the article, as well as related metadata and methods (https://journals.plos.org/plosone/s/data-availability#loc-minimal-data-set-definition). For example, authors should submit the following data: - The values behind the means, standard deviations and other measures reported; - The values used to build graphs; - The points extracted from images for analysis. Authors do not need to submit their entire data set if only a portion of the data was used in the reported study. If your submission does not contain these data, please either upload them as Supporting Information files or deposit them to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. For a list of recommended repositories, please see https://journals.plos.org/plosone/s/recommended-repositories. If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially sensitive information, data are owned by a third-party organization, etc.) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent. If data are owned by a third party, please indicate how others may request data access. 3. When completing the data availability statement of the submission form, you indicated that you will make your data available on acceptance. We strongly recommend all authors decide on a data sharing plan before acceptance, as the process can be lengthy and hold up publication timelines. Please note that, though access restrictions are acceptable now, your entire data will need to be made freely accessible if your manuscript is accepted for publication. This policy applies to all data except where public deposition would breach compliance with the protocol approved by your research ethics board. If you are unable to adhere to our open data policy, please kindly revise your statement to explain your reasoning and we will seek the editor's input on an exemption. Please be assured that, once you have provided your new statement, the assessment of your exemption will not hold up the peer review process. 4. Your ethics statement should only appear in the Methods section of your manuscript. If your ethics statement is written in any section besides the Methods, please delete it from any other section. Additional Editor Comments: The study by Halime et al. is interesting and demonstrates the therapeutic value of EVs in attenuating cisplatin-induced testicular toxicity. However, just like both reviewers have suggested a major revision, the manuscript needs a thorough revision to meet the standard of this journal. Authors should also consider editing the manuscript for grammar and syntax. In addition to the reviewers' comments, these comments would be useful: Abstract 1. What are the metabolites of cisplatin that exert its effect 2. “MDA activity”. Is MDA an enzyme? 3. Include recommendations Introduction 1. Paragraph 1: The effects should precede the mechanisms 2. Paragraph 3: The note on autophagy is hanging. It is not linked with cisplatin nor EV Methods/Discussion 1. The immunolocalization of the assayed molecules should be discussed rather than the expression only 2. Since cisplatin also suppresses hypothalamic-pituitary-testicular axis, it is important to evaluate gonadotropins and GnRH 3. How long did the study last? 4. Was spermatogenic cycle studied? 5. Why is the histology of the epididymis not presented? 6. It is not sufficient to report sperm count and motility and ignore other sperm physiological functions. Are others not relevant? [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions -->Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. --> Reviewer #1: Yes Reviewer #2: Yes ********** -->2. Has the statistical analysis been performed appropriately and rigorously? --> Reviewer #1: Yes Reviewer #2: Yes ********** -->3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.--> Reviewer #1: Yes Reviewer #2: Yes ********** -->4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.--> Reviewer #1: No Reviewer #2: No ********** -->5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)--> Reviewer #1: Although this study is interesting, there are many problems with this manuscript, mainly due to missing information in the text, improperly explained facts, and missing references. For all the details, I attach a PDF with all reviewer comments. Reviewer #2: Hi Dr Yildiz I have gone through your work and want to commend you for the effort which you have made to put this together, especially seeing that this project is likely self-funded. However, I have the following comments to make this better for the entire scientific community; 1. The use of English in this draft does not represent the best scientific expertise expected for a paper like this. 2. From the opening sentence of your abstract , you failed to ignite my enthusiasm about this project. The significance of cisplatin...why cisplatin? Justification for the study? The purpose section in your abstract must be rewritten. This manuscript have great potential if you can do that. Then, the methods... Rewrite your methods so we understand your methodology well...length of experiment, animals? How many? You left me clueless about this experiment here! Then, how did you get your data? Laboratory analysis? Statistical tests? You said testicular morphology was examined using H&E?? Really???? Histoarchitecture or morphology ?? Please add the methods you used for the measurement of hormones, sperm parameters. Your methodology is very poor in this abstract in that... You omitted so many details.... 3. The results subsection of your abstract is also faultable. I expect that the results will be presented in a logical sense that follows a thorough discussion of effect and mechanism. For example; first state the effects on structure, Hormone (function), sperm parameters (function) then the mechanisms of these negative or positive changes (oxidative stress, autophagy) 4. The conclusion of the abstract does not show comprehensive snapshot of your results. I guess you were have a wordcount limit for your abstract but you have to do these corrections to put this manuscript in top shape. 5. Your introduction is needs to be overhauled. From the first sentence with reference (Cisplatin I'd a potent....) to " it has been reported" when you actually didn't add those studies that reported. The third sentence on the genotoxic effects of Cis also lacks merit? Formation of primordial follicle is a genotoxic effects?? Are you sure? You indicated that Cis reduces spermatogenesis? How? What sperm parameters? What stage of spermatogenesis? 6. Then you described EVs as if you didn't get the description somewhere, why? This dampens my enthusiasm, honestly! Each factual statement you make should be backed by a reference. 7. The next paragraph is same. So many missing references. Each factual statement should end with a reference. 8. Replace "long-lived" with a more appropriate adjective. 9. I see no need for the "much research has been focused on starvation-induced autophagy..." What are you trying to say? A lot of missing connections in the paragraph. 10. These paragraphs in the introduction do not connect. 11. I was expecting your introduction will shadow this line of thought Few sentences on general info about cisplatin. Then it's toxicity on general physiology in humans and animal models. Then, the reprotoxic effects. This should be detailed and more of males. After stating the effects, you discuss the mechanisms. Then, the following paragraph will tow... "On the other hand, EVs are bla bla..." After the general info about EVs you should talk about effects in several reprotoxicity models , preferably cisplatin or anticancer drugs (if available). You should discuss the mechanisms of its effects exhaustively. 11. Be sure to cite similar works https://doi.org/10.1007/s43188-024-00250-3 in your methodology especially for spermatogenesis, hormones, oxidative stress. 12. Your discussion should tow the same line for the presentation of result. Always be sure to first summarize your findings in the first paragraph of discussion, then discuss histology and morphological parameters in the next paragraph. The following paragraph should discuss findings on hormones... 13. Next, spermatogenesis and sperm parameters, then go to the mechanisms in the subsequent paragraph. 14. Your discussion should include strengths and weaknesses of this study. Your methodology is unique and I am sure there are good things and limitations to it. 15. If possible include graphical abstract. This is not compulsory though. ********** -->6. PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy .--> Reviewer #1: No Reviewer #2: Yes: Oyedokun PRECIOUS ADEOYE ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org . Please note that Supporting Information files do not need this step.
|
| Revision 1 |
|
Extracellular Vesicles Therapy Alleviates Cisplatin-Induced Testicular Tissue Toxicity in a Rat Model PONE-D-24-32691R1 Dear Dr. TOZAK YILDIZ, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Roland Eghoghosoa Akhigbe Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions -->Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.--> Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** -->2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. --> Reviewer #1: Yes Reviewer #2: Yes ********** -->3. Has the statistical analysis been performed appropriately and rigorously? --> Reviewer #1: Yes Reviewer #2: Yes ********** -->4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.--> Reviewer #1: Yes Reviewer #2: Yes ********** -->5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.--> Reviewer #1: Yes Reviewer #2: Yes ********** -->6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)--> Reviewer #1: The authors have basically reworked their submission and thereby have improved it significantly. Except for a few minor editorial corrections that should be done, I am satisfied. I attach a PDF in which I indicated these issues. Reviewer #2: The authors have addressed all comments previously raised. I am satisfied with the current version of the paper. ********** -->7. PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy .--> Reviewer #1: No Reviewer #2: Yes: Oyedokun Precious Adeoye ********** |
| Formally Accepted |
|
PONE-D-24-32691R1 PLOS ONE Dear Dr. Tozak Yıldız, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Roland Eghoghosoa Akhigbe Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .