Peer Review History

Original SubmissionJuly 2, 2024
Decision Letter - Joshua Kiddy K. Asamoah, Editor

PONE-D-24-26378Co-infection mathematical model for HIV/AIDS and tuberculosis with optimal control in EthiopiaPLOS ONE

Dear Dr. Ayele,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

==============================

ACADEMIC EDITOR:The authors should address the remeaning reviewers' comments. (1) Each section should have its writing aligned.

==============================

Please submit your revised manuscript by Sep 28 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.
  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.
  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Joshua Kiddy K. Asamoah, PhD

Academic Editor

PLOS ONE

Journal requirements:

1. When submitting your revision, we need you to address these additional requirements.

Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at 

https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 

https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf.

2. Please note that PLOS ONE has specific guidelines on code sharing for submissions in which author-generated code underpins the findings in the manuscript. In these cases, all author-generated code must be made available without restrictions upon publication of the work. Please review our guidelines at https://journals.plos.org/plosone/s/materials-and-software-sharing#loc-sharing-code and ensure that your code is shared in a way that follows best practice and facilitates reproducibility and reuse.

3. We note that your Data Availability Statement is currently as follows: [All relevant data are within the manuscript and its Supporting Information files.]

Please confirm at this time whether or not your submission contains all raw data required to replicate the results of your study. Authors must share the “minimal data set” for their submission. PLOS defines the minimal data set to consist of the data required to replicate all study findings reported in the article, as well as related metadata and methods (https://journals.plos.org/plosone/s/data-availability#loc-minimal-data-set-definition).

For example, authors should submit the following data:

- The values behind the means, standard deviations and other measures reported;

- The values used to build graphs;

- The points extracted from images for analysis.

Authors do not need to submit their entire data set if only a portion of the data was used in the reported study.

If your submission does not contain these data, please either upload them as Supporting Information files or deposit them to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. For a list of recommended repositories, please see https://journals.plos.org/plosone/s/recommended-repositories.

If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially sensitive information, data are owned by a third-party organization, etc.) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent. If data are owned by a third party, please indicate how others may request data access.

4. Please update your submission to use the PLOS LaTeX template. The template and more information on our requirements for LaTeX submissions can be found at http://journals.plos.org/plosone/s/latex.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Partly

Reviewer #2: Yes

**********

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: N/A

Reviewer #2: N/A

**********

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: No

Reviewer #2: No

**********

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: No

Reviewer #2: Yes

**********

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: The paper requires a major improvement in order to meet the standards of the journal. My comments are found below.

1. The abstract fails to justify the need for this research study. Also, the first statement in the Abstract is unnecessary. Remove it and reconstruct the abstract with necessary information. Be clear with the reason behind this work, how to go about it and the key results obtained.

2. The novelty of this research is not clearly stated. Please do that.

3. The authors claim that "However, none of these authors have studied the extension of model [68] with HIV/AIDS cohorts and incorporating optimal control efforts". The referred article [68] was extended in 2022 Zhong-Kai et. al. by where the authors studied the HIV/AIDS-TB coinfection model with optimal control by further considering age structure. Authors may find the article details here "Guo, Z. K., Huo, H. F., & Xiang, H. (2022). Optimal control of TB transmission based on an age structured HIV-TB co-infection model. Journal of the Franklin Institute, 359(9), 4116-4137".

4. The authors said also that due to lack of data they picked some parameter values from literature. How true is this? Are the authors claiming that there is no data on HIV/AIDS or TB or their coinfection?

5. In table 2, the authors have indicated that some parameters were fitted. Which year's population for Ethiopia was used for the estimation? Where from the value of N? What is the source of the data used for the estimation? Kindly consider coming out with an updated parameter estimation section.

6. Authors should note that table labels should be placed on top of the table.

7. The article has enormous grammatical errors. Please read through the entire work to correct them.

There are several graphs with no proper discussions on them. Please remove redundant graphs or rewrite the numerical discussions. Numerical simulation discussions should practical.

8. All model assumptions should be supported with literature.

9. Though I see a section on positivity and boundedness. Unfortunately, I did not see any work on positivity. Please provide that.

10. Authors should be clear with the bifurcation analysis. Does the model undergo a forward or backward bifurcation. Where is the bifurcation graph?

11. Under the control model, is early detection not more of a control mechanism than preventive?

12. Conclusion of the work should be updated. The current form is too long and does not highlight the essential aspects of the work. What are the gaps in the work?

13. The introduction and model formulation sections require improvement. Please do that.

Reviewer #2: I read the paper in details, the paper has a potential for publication provided the authors attends to the following suggestions

1. The abstract should contain answers to the following questions: Why is this particular study important? What are the important results from this study different from others? What conclusions can be drawn from the results in this study?

2. The literature review of epidemic models in this direction is too weak and must be improved meticulously, since there are many works in this direction.

3. Support important model assumptions with biological evidences. Also state if the model is a new one or a modification of an existing model.

4. What is the biological significance of the Basic reproduction number, as it regards to disease control? Also discuss Theorem 1 and why it important.

5. What are the epidemiological significance of theorems 1, 2? Be more detailed in discussing the many mathematical analyses. I advise the authors to check some recent papers with useful approach for analysis of stability analysis useful, such as:

a. Mathematical analysis of a novel fractional order vaccination model for Tuberculosis incorporating susceptible class with underlying ailment. International Journal of Modelling and Simulation

b.Mathematical Modelling of Tuberculosis Outbreak in an East African Country Incorporating Vaccination and Treatment. Computation 2023, 11, 143.

c. A mathematical analysis of the two-strain tuberculosis model dynamics with exogenous re-infection. Healthcare Analytics. 4 (2023) 100266

d. A mathematical model for the co-dynamics of COVID-19 and tuberculosis. Mathematics and Computers in Simulation. 27(2023), 499-520

e. . Mathematical model for control of tuberculosis epidemiology. Journal of Applied Mathematics and Computing, (2022)

f. Analysis and Dynamics of Tuberculosis Outbreak: A Mathematical Modelling Approach Advances in System Science and Applications 22(4), 144-161 (2022).

g. Analysis and Dynamics of Tuberculosis Outbreak: A Mathematical Modelling Approach Advances in System Science and Applications 22(4), 144-161 (2022).

and others where detailed discussions have been done for mathematical analysis in epidemiological models. Try and connect your results more to health, in accordance with the scope of the journal.

The Conclusion should be greatly improved and must capture important findings from the study.

Provide detailed future research directions in the conclusion.

The entire manuscript should be thoroughly checked for typos and also the typesetting should be greatly improved to attract wider readership. Make the paper more interesting to readers

**********

6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Reviewer #2: Yes: Olumuyiwa James Peter

**********

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Revision 1

We sincerely thank the editor and reviewers for taking the time to review our manuscript and providing constructive feedback to improve our manuscript. We have revised the manuscript accordingly by following the reviewers’ suggestion. The letter response to reviewers is attached in file section. The revised manuscript is attached next to the old manuscript is uploaded.

Attachments
Attachment
Submitted filename: Authors response to Journal of PLOS ONE.pdf
Decision Letter - Joshua Kiddy K. Asamoah, Editor

Co-infection mathematical model for HIV/AIDS and tuberculosis with optimal control in Ethiopia

PONE-D-24-26378R1

Dear Dr. Ayele,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Joshua Kiddy K. Asamoah, PhD

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #2: (No Response)

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: (No Response)

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: (No Response)

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: (No Response)

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: (No Response)

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: I have carefully read through the responses and corrections, and I think the authors have accurately responded to my comments. The paper is improved in its current form. Thank you.

Reviewer #2: The authors have addressed all the comments satisfactorily, the manuscript can be accepted in the current form

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Reviewer #2: Yes: Olumuyiwa James Peter

**********

Formally Accepted
Acceptance Letter - Joshua Kiddy K. Asamoah, Editor

PONE-D-24-26378R1

PLOS ONE

Dear Dr. Ayele,

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team.

At this stage, our production department will prepare your paper for publication. This includes ensuring the following:

* All references, tables, and figures are properly cited

* All relevant supporting information is included in the manuscript submission,

* There are no issues that prevent the paper from being properly typeset

If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps.

Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

If we can help with anything else, please email us at customercare@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Joshua Kiddy K. Asamoah

Academic Editor

PLOS ONE

Open letter on the publication of peer review reports

PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.

We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.

Learn more at ASAPbio .