Peer Review History
| Original SubmissionMarch 14, 2024 |
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PONE-D-24-10230Socioeconomic deprivation and suicide in Appalachia: The use of three socioeconomic deprivation indices to explain county-level suicide ratesPLOS ONE Dear Dr. Caswell, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== ACADEMIC EDITOR: Dear author, I hope this message finds you well. I apologize for the delay in sending you the feedback on your manuscript. Unfortunately, we encountered challenges in securing additional reviewers for your article, which resulted in the delay. We have received a detailed review from one of the reviewers, who have suggested a major revision to ensure the manuscript meets the standards of our journal. Please carefully address the concerns raised by the reviewer. If you have any questions or require clarification on any of the points, feel free to reach out, and I will be happy to assist you. Thank you for your understanding and patience throughout this process. We appreciate your commitment to the quality and integrity of academic publishing. ============================== Please submit your revised manuscript by Oct 04 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Angela Mendes Freitas Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: I Don't Know ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: General comments 1) The study aimed to examine the relationship between socioeconomic deprivation and suicide rates in West Virginia, given the local high prevalence of both suicide and socioeconomic deprivation. 2) The authors used three well-known deprivation/vulnerability indices to assess their relationship with suicide rates. The three selected indices were: i) the Townsend Deprivation Index (TDI), ii) Social Deprivation Index (SDI), and iii) Social Vulnerability Index (SVI). Negative binomial regression models assessed the relationship between socioeconomic deprivation scores, individual index variables, and suicide rates. Model comparisons were conducted using the Akaike Information Criterion (AIC). A backward selection identified key variables for examining suicide rates. The models were adjusted for rurality. 3) The study does not appear to have ethical problems. The minimum number of the population per county was 50150.00 and of the 55 West Virginia counties, 3 counties had less than 10 suicide cases during the study period and were excluded from the analysis. Although the authors mentioned that the study follows the rules for data suppression in areas with few cases, they did not present the reference used to support this choice. 4) The authors did not provide the dataset used for the study. They only reported that the data underlying the results presented in the study are publicly available through different websites. Ideally, the data should be provided as part of the manuscript or its supporting information, or deposited in a single public repository. Major revision 1) In the introduction, some main ideas appear repeatedly, mainly regarding the local evidence, while the main findings and gaps of similar studies developed for other regions of the world were not explored in depth. The topic has already been extensively studied for other regions, and the introduction should be aligned with current specific literature. In this sense, the local evidence could be reorganized into one or two paragraphs and more robust evidence on the relationship between the suicide rates and socioeconomic deprivation from studies developed for other regions should be considered in the introduction. 2) In the following lines, the authors concluded that the differences found in the associations between poverty and suicide by previous studies were due to the poverty measure. However, many other factors could be influencing it (e.g., the geographic area, the method used to measure the association, etc.). Thus, it is necessary to explain how these studies are relatable and if there is evidence for the same area and using the same methods, for example. Lines 74-77. “Therefore, studies examining the association between poverty and suicide using a single poverty measure have shown varied results depending on the metric used to capture poverty. For example, a few studies found significant inverse relationships between poverty and suicide [20-23], while others found no association [23-25]”. 3) In general, along the introduction, the authors often referred about the potential effects of “poverty” and “socioeconomic deprivation” on suicide. The attempt to distinguish these concepts was not clear (e.g., lines 70-74). It is necessary to define these two concepts, explain how they are related and rewrite the introduction accordingly, to give a better understanding of the problem. I think it is also important to define and explain the relationship between these two concepts and “vulnerability”, since one of the selected indices were the Social Vulnerability Index (SVI). 4) In the section “Identifying Key Index Items”, lines 213-214, the authors mentioned that the final model, following the backward selection strategy, included the percentage of those without a high school diploma and other variables. According to the methods, items with the highest p-value should be excluded from the models one at a time until all items remained significant at the 0.10 level (lines 211-212). In this sense, the inclusion of the percentage of those without a high school diploma seems a mistake. The p-value of this variable (0.11) is quite close to the significant level of reference, but its inclusion needs to be justified. Minor revision 1) It is necessary to mention the area that is being compared to the Appalachian Region in the following lines: Lines 48-49. “The Appalachian Region has an urgency to reduce suicide rates, as its residents are 21% more likely to die by suicide”. 2) There is duplicate information in the following lines: Lines 101-103. “Additional cases were those identified using the classification codes that represent accidental poisonings 101 (X40-X43) and poisoning of undetermined intent (Y10-Y15). X40-X43 (accidental poisoning and Y10- 102 Y15 (poisoning of undetermined intent)”. 3) In the “Suicide Estimates”, it is important to mention the source of the population estimates used to calculate the suicide rates. Only in Table 1 it was possible to conclude that it was obtained from the same database as suicide cases. 4) In the “Three Socioeconomic Deprivation Indices”, it is important to cite the first publications of the methodologies used to calculate the selected indices. As the different deprivation/vulnerability indices are central elements of the study and different methods can produce different results of deprivation, a brief description of how the scores of these indices are obtained is also needed in this section. 5) In the “Statistical analysis”, lines 125-126, it is important to cite the reference used for the data suppression. 6) In the “Statistical analysis”, lines 130-131, it is important to cite the references that justified the choice for the model (negative binomial model). I am not sure if the negative binomial regression can handle underdispersion, specifically. Furthermore, did the data present overdispersion or underdispersion? That wasn't clear. 7) In the “Statistical analysis”, lines 131-133, it is important to cite the references of suicide research used to justify why the models were adjusted for rurality. 8) In the “Descriptive Statistics”, the authors mention that the socioeconomic deprivation scores are not comparable between indices (lines 149-150). The interpretation of the results could be facilitated by transposing the scores of the 3 indices into the same scale of values. 9) In the lines 160-162, the following information does not coincide with the data shown in Table 2: “The lowest model AIC was found in the Social Vulnerability Index (370.20), followed by the Townsend Deprivation Index (374.52) and Social Deprivation Index (374.52)”. 10) The scale of the map must be inserted in Figure 1. 11) In lines 165-166, it seems better to exclude the following information: “When compared to the reference map”. The conclusion does not seem to result from a comparison with the reference map. “When compared to the reference map, the map of suicide rates predicted by the Social Deprivation Index demonstrated the least variability in suicide rates among counties (30-43 deaths per 100,000 people)”. 12) In the section “Examining Individual Index Items”, the authors forgot to mention the significant value observed for the “Aged 25 or older with Less Than 12 Years of Education (%)” variable, which composes the SDI. A variable related to education was presented in 2 out of the 3 indices (the SDI and SVI). In both cases, the variable related to education presented a significant value (Table 3), but it was ignored in the text, in which the authors only mentioned the other significant variables. 13) In the section “Identifying Key Index Items” (lines 208-211), the authors forgot to mention the percentage of those without a high school diploma (β=0.02, p<0.01). 14) In the discussion (lines 300-301), the authors mentioned that multicollinearity could be present in the analyses but did not appear to be substantial based on the variance inflation factors. It is recommended to show the maximum value observed for multicollinearity. 15) In Supporting Information (S1_Table), it is recommended to show which age group was considered to calculate the unemployment rate of the SVI. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-24-10230R1Socioeconomic deprivation and suicide in Appalachia: The use of three socioeconomic deprivation indices to explain county-level suicide ratesPLOS ONE Dear Dr. Caswell, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Nov 01 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Angela Mendes Freitas Academic Editor PLOS ONE Additional Editor Comments: Dear authors, Following the reviewer's feedback, there are still some issues that need to be addressed before your manuscript can be accepted for publication. Please check the comments below. Best regards, [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors have attempted to address all comments from the previous round of review. However, I believe that the following two points still require major revisions: 1) In the "Supporting information - Manuscript Data", the following file does not present the data: “tdisuicide_final_ruralclass.xlsx”. In addition, all files are missing the data dictionary. 2) The attempt to differentiate "poverty" and "socioeconomic deprivation" was not clear. The authors presented their own definitions, but it is important to present the references that guided the choice of these definitions. Furthermore, there is still inconsistent information in the text, for example between the following excerpts: Page 4. Lines 80-84. "Poverty refers specifically to a lack of financial resources, while socioeconomic deprivation encompasses a wider range of hardships, such as limited access to education, substandard housing, inadequate transportation, and diminished social capital. Unlike poverty, which focuses on income, socioeconomic deprivation provides a more holistic view by capturing multiple dimensions of material and social disadvantage". Page 4. Lines 88-94. "For example, socioeconomic deprivation has been assessed using readily available poverty measures such as unemployment, education level, and income. [13] Studies in the United States have predominantly relied on income to measure poverty. [18-21] However, poverty assessed solely by income only indirectly measures socioeconomic deprivation. Poverty is a complex construct comprised of many factors that income alone does not fully capture, such as lack of material resources and overall standard of living. [20] These standalone measures of poverty may not capture socioeconomic deprivation comprehensively and accurately. [22]". ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Socioeconomic deprivation and suicide in Appalachia: The use of three socioeconomic deprivation indices to explain county-level suicide rates PONE-D-24-10230R2 Dear Dr. Caswell, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Angela Mendes Freitas Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-24-10230R2 PLOS ONE Dear Dr. Caswell, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Angela Mendes Freitas Academic Editor PLOS ONE |
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