Peer Review History
| Original SubmissionOctober 15, 2024 |
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PONE-D-24-41674Neuroinvasive and neurovirulent potential of SARS-CoV-2 in the acute and post-acute phase of intranasally inoculated ferretsPLOS ONE Dear Dr. van Riel, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. During the revision process, please clarify the position on the neuroinvasive conclusions drawn based on the data presented. Please submit your revised manuscript by Feb 21 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Ferret experiments were previously published and supported by funding from the National Institutes of Health (AI146980, AI121349, NS091263, AI114736, HHSN272201400008C). Please state what role the funders took in the study. If the funders had no role, please state: ""The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript."" If this statement is not correct you must amend it as needed. Please include this amended Role of Funder statement in your cover letter; we will change the online submission form on your behalf. 4. Thank you for stating the following in the Acknowledgments Section of your manuscript: This work was funded in part by a fellowship from the Netherlands Organization for Scientific Research (VIDI contract 91718308). Ferret experiments were previously published and supported by funding from the National Institutes of Health (AI146980, AI121349, NS091263, AI114736, HHSN272201400008C). We note that you have provided funding information that is not currently declared in your Funding Statement. However, funding information should not appear in the Acknowledgments section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: This work was funded in part by a fellowship from the Netherlands Organization for Scientific Research (VIDI contract 91718308). Ferret experiments were previously published and supported by funding from the National Institutes of Health (AI146980, AI121349, NS091263, AI114736, HHSN272201400008C). Please include your amended statements within your cover letter; we will change the online submission form on your behalf. 5. 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If your submission does not contain these data, please either upload them as Supporting Information files or deposit them to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. For a list of recommended repositories, please see https://journals.plos.org/plosone/s/recommended-repositories. If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially sensitive information, data are owned by a third-party organization, etc.) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent. If data are owned by a third party, please indicate how others may request data access. 6. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The manuscript titled “Neuroinvasive and neurovirulent potential of SARS-CoV-2 in the acute and post-acute phase of intranasally inoculated ferrets” by Benavides et al. examines the potential of SARS-CoV-2 to invade the brain and cause neurological changes in a ferret model. The study offers valuable insights into how even mild respiratory infections might impact the brain, highlighting subtle changes in microglial and astrocytic activity. However, several methodological limitations need to be addressed to enhance the robustness of the findings. Major Concerns: 1. While the study detects viral RNA in the brain through qPCR, this is not confirmed by in situ hybridization (ISH) or immunohistochemistry (IHC). This weakens the claim of neuroinvasion. Employing electron microscopy, at earlier time points (e.g., days 2–4) could provide stronger evidence. 2. Although changes in microglial and astrocytic activity are reported, the study does not explore functional consequences such as cognitive or behavioral changes. Including behavioral data or electrophysiological studies in future work would significantly enhance the interpretation of these findings. If these experiments are not feasible at this stage, the manuscript should include a discussion of potential follow-up studies to explore functional outcomes and current limitations. 3. The small sample size limits the statistical power and generalizability of the results. The authors should acknowledge this limitation and propose including larger cohorts in future research to address inter-individual variability. 4. Sampling at 7 and 21 dpi may overlook critical early events of neuroinvasion or inflammatory response. Including earlier time points (e.g., 1–4 dpi) in future studies is recommended. The authors should discuss this limitation in the current manuscript. 5. Incorporating systemic cytokine profiling would provide valuable information about potential indirect mechanisms driving neurovirulence, adding depth to the findings. Minor Concerns: 1. While the figures and tables are informative, adding more detailed statistical annotations would improve clarity and accessibility for readers. 2. The extent of GFAP changes in areas beyond the olfactory bulb is unclear. This should be clarified. Conclusion: This study offers important insights into the neurological effects of SARS-CoV-2 in a mild respiratory disease model and underscores the relevance of the ferret model in this context. However, the absence of direct evidence for neuroinvasion, limited exploration of functional consequences, and other methodological constraints reduce its impact. Addressing these concerns, either experimentally or through a detailed discussion, would strengthen the manuscript and make its contributions clearer to the readership. Recommendation: Revisions required. Reviewer #2: The authors describe a study on the neuroinvasive and neurovirulent potential of SARS-CoV-2 conducted on the ferret animal model, specifically those that had subclinical or mild infection for which it is currently unknown. It was noted that tissues analysed in the present work were collected from a previous study (ref 29) on intranasally inoculated SARS-CoV-2 ferrets. Findings on the limited neuroinvasive potential of the virus warrants further work on the neurological effects of subclinical/mild disease. Methods and results were generally well described however, the writing would benefit from editing/language checks with the following observed upon review: Line 64: “In experimentally inoculation animals…” suggest to check the term used. Line 91: "...infection is currently unknown, Therefore we investigated the neuroinvasive..." Other comments: Line 71: Authors described the mechanisms of neurovirulence, but in what way are microglia/astrocytes activated with SARS-CoV-2 infection? E.g. neuroinflammatory response, activation of mast cells? Line 298: A number of references were listed i.e. (4,5,14,16,17,29) - it would be worth providing some description of other similar studies e.g. in ferrets, relating to the results of this study and how they differ/align. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy . Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org . Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Neuroinvasive and neurovirulent potential of SARS-CoV-2 in the acute and post-acute phase of intranasally inoculated ferrets PONE-D-24-41674R1 Dear Dr. van Riel, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Victor C Huber Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-24-41674R1 PLOS ONE Dear Dr. van Riel, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Victor C Huber Academic Editor PLOS ONE |
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