Peer Review History
| Original SubmissionJune 21, 2024 |
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PONE-D-24-25335Voluntary wheel running exercise rescues behaviorally-evoked acetylcholine efflux in the medial prefrontal cortex and epigenetic changes in ChAT genes following adolescent intermittent ethanol exposurePLOS ONE Dear Dr. Savage, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. The reviewers' request significant modifications to the submitted manuscript. The methodology and the results description should be more detailed and precise. Please modify these sections clarifying the reviewers' doubts and providing justification for their concerns. There are inconsistencies between the abstract and the results section. Please also note that there are concerns regarding the analysis and presentation of sex differences, as well as the possibility of litter effects. Please submit your revised manuscript by Sep 06 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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If consent was waived for your study, please include this information in your statement as well. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors show that wheel running is able to reverse both behavioral and epigenetic deficits caused by adolescent alcohol exposure (repeated gavage). Together, these build on the observation that alcohol causes cognitive deficits due to cholinergic disfunction in the mPFC, and provide rationale for exercise as a therapeutic intervention to reverse alcohol effects (and perhaps provide a mechanism more broadly for exercise to restore cholinergic function and cognition across conditions). Indeed, wheel running increases mPFC cholinergic efflux in non-alcohol mice as well as AIE. While the data are interesting, there are several important areas where the description of the data (e.g. in the abstract) seem not to conform to what the data actually shows, as well as other issues of presentation and clarity in the data (and especially showing significance in several figures). Some parts of the manuscript are specifically noted below, but similar changes should be made throughout. One concern is in Fig.6, where AIE increases Chat markers in males, but wheel running does not reverse this effect. This would contradict the abstract that “VEx rescued the AIE induced deficits in … epigenetic changes in ChAT genes” (line35-36, also lines 94-96 and elsewhere in manuscript). The findings also contradict this sentence since it says “in both sexes” since Fig6 shows a wheel running reversal effect in females but not males. It is unclear from the text in lines 390 and on whether there are effects in males, which are not shown in the figure. In fact, lines 398-399 to say that wheel running “insignificantly blunted” the measure is not appropriate to say (especially in relation to how it is framed in the abstract and end of introduction, and in lines 408-409). That is, to say “exercise exposure in adulthood rescued H3K9me2 methylation of the Chat promoter CpG island across males and females” is not correct. Another concern is in Figure 4D, where it is unclear that AIE itself causes changes in cognitive function. Lines 364 to 367 describe that there is an interactive effect, but this is not shown in the Figure, also lines 468- mention that AIE does not alter flexibility in the present model. Also, in this section, there is no mention of testing for a sex effect (while line377 shows such a test for sex for a different measure), and this is the only measure with an AIE x wheel running effect. In addition, since there are clear sex differences in the ChAT changes, the key changes in the behaviors in Fig4D should be shown separated by sex. A further concern regarding cholinergic measures is that some references are described as showing that wheel running reverses AIE changes in epigenetic markers. Thus, it should be made explicit what is new about the measures performed here. Even if they are replications, that is fine, it should just be made clearer. Thus, the manuscript overall needs much clearer description of the findings, especially the abstract, to note sex differences in observed patterns (as well as similarities between males and females). It should make clear the cases where AIE did had an effect on particular measures that was reversed by wheel running, with no such effect in controls. The manuscript and abstract should also be clearer where wheel running has an overall effect compared with specific effects in AIE. This occurs e.g. for cholinergic dialysis which is increased in both AIE and controls (lines 330 on, where there was no exposure exercise interaction), and lines 426-427 which only describe effects in AIE and doesn’t mention running enhancing ACh also in controls. These are important because it suggests that some effects of wheel running are surely valuable therapeutically, but are not simply “reversing” AIE effects. In Fig3, the bars to compare significance across groups in the legend is confusing and should be made clearer. Similar in Fig4C,D for bars above the figures. Reviewer #2: This manuscript addresses a relevant issue regarding long-term deleterious effect of ethanol exposure during adolescence upon cholinergic signaling and cognitive functions. Additionally, they employed voluntary activity later in life and investigated whether it might cause beneficial outcomes on ethanol-induced effects in their model. The study is strengthened by the inclusion of animals of both sexes as well as measures during the ethanol exposure period and at the time-point of behavioral evaluations. Although the experiments are pretty straight forward, there are some methodology, analysis and interpretive concerns. In the ensuing paragraphs these major and secondary concerns are described. Major concerns: 1 - To this reviewer, a matter of concern is the number of animals used in each experimental condition. The authors stated that, for both experiments, “no more than two pups of each sex per litter was assigned to an experimental condition”. This brings a concern about litter-effect on this manuscript’s data. Firstly, how many litters were used in each experiment ? This is an important issue since the variability within litters, as well-known, is lower than between. Thus, it is a major source of variability in an experiment and controlling it is crucial to enhance rigor and reproducibility. Thus, to avoid litter-effect on results the authors should use the mean of pups from each litter for each experimental condition. Accordingly, the sample size described in the manuscript should be corrected to present the adjusted numbers. This brings another concern about whether the number of animals used was appropriated. In this sense, it is possible that some sample sizes are around 6 if using the mean per litter, which would be too small, particularly regarding behavioral evaluation. To this reviewer it is critical that these questions are answered and that the answers reflect a reasonable experimental design. 2 – I understood that in experiment 1 mice were submitted to both behavioral tests. If that is correct, it is not clear why the sample sizes for the attention set shifting and reversal learning is bigger than the ones in microdialysis and spontaneous alternation. Please, clarify. 3 – It is not clear how animals used in the HPLC and cresyl violet staining were euthanized. Was it immediately after the attention set shifting and reversal learning test? What was the method used? Also, in line 243, it is described that in the experiment 1, all rats were anaesthetized and perfused. Is that correct? Please, provide a detailed description for euthanasia in experiment 1. 4 – In some points of the manuscript the authors give the idea that previous data had already shown that AIE model does not affect spontaneous alternation (lines 451-454). So, why did the authors used this test? Shouldn’t this be addressed as a limitation of the study? 5 – It is not clear to this reviewer why the authors presented the ChIP results separated by sex. In the statistical analysis, in the methods session, the authors stated that they used a 2 x 2 ANOVA. Thus, I assumed that sex was not a factor in this analysis. If that is correct, the authors must provide rationale for, a priori, analyze males and females separately only for this variable. Otherwise, they should perform the analysis including sex as a factor. Please clarify. Minor: 1 – The description of the attention set shifting and reversal learning test could be improved if reorganized. For instance, in the second paragraph describes the acquisition session, which involves a response based on animal’s preferred side. The establishment of the side preference was not described yet. As a suggestion, considering the complexity of the protocol, the authors could describe it chronologically. 2 – The lines 269-272 should be revised. 3 – Some results are not addressed in the discussion session. For instance, was the sex difference in weight gain expected or not? What could explain it? Additionally, there was an effect of Exercise in the levels of H3K9me2 at Chat promoter of females (but, please, see comment 4 in major about the analysis of this variable). However, it is not discussed. Could it be related to the hyperactivity in females compared to males? 4 – The conclusion session should be revised. The authors wrote that: “… AIE, its effects on behaviors modulated by the cholinergic system are variable.”. It is difficult to conclude this since there are limitations in the behavioral testes used in this work (lines 451-454; 474-475; 488-495). Besides that, afterwards, the authors address phasic and tonic ACh signaling and attention set shifting behaviors. It was not addressed anywhere else in the manuscript. It is difficult to understand the impact/importance of these types of signaling to the study. If it is important, please provide rationale for it in the introduction and discussion sessions. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. 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| Revision 1 |
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Voluntary wheel running exercise rescues behaviorally-evoked acetylcholine efflux in the medial prefrontal cortex and epigenetic changes in ChAT genes following adolescent intermittent ethanol exposure PONE-D-24-25335R1 Dear Dr. Savage, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Yael Abreu-Villaça, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: (No Response) Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: All changes made, including separating analyses by sex, lead the manuscript to now be acceptable for publication in PLOS Reviewer #2: The authors provide a detailed point-by-point response letter, being very responsive to reviewers´ comments. All my concerns were addressed and this version is much improved. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** |
| Formally Accepted |
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PONE-D-24-25335R1 PLOS ONE Dear Dr. Savage, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Yael Abreu-Villaça Academic Editor PLOS ONE |
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