Peer Review History
| Original SubmissionJune 21, 2024 |
|---|
|
PONE-D-24-25299Coccolithophore assemblage composition during the Greenland Interstadial–Stadial 20 transition and their response to the Youngest Toba Tuff (YTT) supereruption ~74,000 years ago in the northeastern Arabian SeaPLOS ONE Dear Dr. Guballa, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Both reviewers much appreciated your work, and i share this feeling. However, there is something to be improved, before publication. Please pay special attention to comments by Reviewer#2, who disputes spectral analysis results. Moreover, in my opinion U. sibogae paleoenvironmental indication is overlooked. Following best literature (you fully cite), U. sibogae shows a positive response, both recorded in relative and absolute abundances, to the onset of the NE monsoon (Andruleit et al., 2000). The cluster analysis carried out on surface sediments associates this species to G. oceanica, within a group characterized by environmental conditions with high nutrient availability (Andruleit and Rogalla, 2002). Thus, this would match your reconstruction, especially at YTT. Please submit your revised manuscript by Sep 01 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Alessandro Incarbona Academic Editor PLOS ONE Journal Requirements: 1. When submitting your revision, we need you to address these additional requirements. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please note that PLOS ONE has specific guidelines on code sharing for submissions in which author-generated code underpins the findings in the manuscript. In these cases, all author-generated code must be made available without restrictions upon publication of the work. Please review our guidelines at https://journals.plos.org/plosone/s/materials-and-software-sharing#loc-sharing-code and ensure that your code is shared in a way that follows best practice and facilitates reproducibility and reuse. 3. In your Methods section, please provide additional information regarding the permits you obtained for the work. Please ensure you have included the full name of the authority that approved the field site access and, if no permits were required, a brief statement explaining why. 4. We noted in your submission details that a portion of your manuscript may have been presented or published elsewhere. Yes, data of the lower photic zone species Florisphaera profunda and the species Helicosphaera carteri was taken from a recently published work by Guballa et al. (2024) (Guballa JD, Bollmann J, Schmidt K, Lückge A. The Toba Eruption 74,000 Years ago Strengthened the Indian Winter Monsoon-Evidence From Coccolithophores. Paleoceanography and Paleoclimatology. 2024;39: e2023PA004823. doi:10.1029/2023PA004823). Our new work is not a dual publication since we explore the response of the upper photic zone coccolithophore assemblages to the Toba eruption and an interstadial-stadial transition. Guballa et. al (2024) solely focused on the reconstruction of primary productivity and the impact of the Toba eruption using the relative abundance of the lower photic zone species Florisphaera profunda (i.e., upper versus lower photic zone species ratio only) for a PP transfer function. The species Helicosphaera carteri was used only to make assumptions about sedimentation processes in the core. Furthermore, in our current manuscript we employ time series analysis (i.e., frequency analysis) to our data set to determine the mechanisms driving the variation of coccolithophore assemblage composition in the upper photic zone in the Arabian Sea. We believe that all these make the current manuscript a new and unique contribution. Please clarify whether this [conference proceeding or publication] was peer-reviewed and formally published. If this work was previously peer-reviewed and published, in the cover letter please provide the reason that this work does not constitute dual publication and should be included in the current manuscript. 5. We note that Figure 1 in your submission contain map images which may be copyrighted. All PLOS content is published under the Creative Commons Attribution License (CC BY 4.0), which means that the manuscript, images, and Supporting Information files will be freely available online, and any third party is permitted to access, download, copy, distribute, and use these materials in any way, even commercially, with proper attribution. For these reasons, we cannot publish previously copyrighted maps or satellite images created using proprietary data, such as Google software (Google Maps, Street View, and Earth). For more information, see our copyright guidelines: http://journals.plos.org/plosone/s/licenses-and-copyright. We require you to either present written permission from the copyright holder to publish these figures specifically under the CC BY 4.0 license, or remove the figures from your submission: a. You may seek permission from the original copyright holder of Figure 1 to publish the content specifically under the CC BY 4.0 license. We recommend that you contact the original copyright holder with the Content Permission Form (http://journals.plos.org/plosone/s/file?id=7c09/content-permission-form.pdf) and the following text: “I request permission for the open-access journal PLOS ONE to publish XXX under the Creative Commons Attribution License (CCAL) CC BY 4.0 (http://creativecommons.org/licenses/by/4.0/). Please be aware that this license allows unrestricted use and distribution, even commercially, by third parties. Please reply and provide explicit written permission to publish XXX under a CC BY license and complete the attached form.” Please upload the completed Content Permission Form or other proof of granted permissions as an "Other" file with your submission. In the figure caption of the copyrighted figure, please include the following text: “Reprinted from [ref] under a CC BY license, with permission from [name of publisher], original copyright [original copyright year].” b. If you are unable to obtain permission from the original copyright holder to publish these figures under the CC BY 4.0 license or if the copyright holder’s requirements are incompatible with the CC BY 4.0 license, please either i) remove the figure or ii) supply a replacement figure that complies with the CC BY 4.0 license. Please check copyright information on all replacement figures and update the figure caption with source information. If applicable, please specify in the figure caption text when a figure is similar but not identical to the original image and is therefore for illustrative purposes only. The following resources for replacing copyrighted map figures may be helpful: USGS National Map Viewer (public domain): http://viewer.nationalmap.gov/viewer/ The Gateway to Astronaut Photography of Earth (public domain): http://eol.jsc.nasa.gov/sseop/clickmap/ Maps at the CIA (public domain): https://www.cia.gov/library/publications/the-world-factbook/index.html and https://www.cia.gov/library/publications/cia-maps-publications/index.html NASA Earth Observatory (public domain): http://earthobservatory.nasa.gov/ Landsat: http://landsat.visibleearth.nasa.gov/ USGS EROS (Earth Resources Observatory and Science (EROS) Center) (public domain): http://eros.usgs.gov/# Natural Earth (public domain): http://www.naturalearthdata.com/ [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: N/A ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: I have no major criticisms of your manuscript, which I generally find to be very good. I have made a few comments on the attached copy. You have correctly identified the impact of YTT as independent of the more regional climatic changes (interstadial-stadial) that occurred in the region. I should have emphasized more the potential dust fertilization that you briefly mention in the discussion, giving it the prominence it deserves. For instance, you could show a more detailed graphic of the major coccolithophore components shortly before (e.g., depths: 1845.6 to 1843.3), during (depths: 1843.1 to 1842.1), and shortly after (e.g., depths: 1842.0 to 1837.6) the event. You could also have included (for the record) results for some of the less abundant species, like C. leptoporus, which interestingly did not show much change. For the other less abundant species, of course additional counts should have been made, particularly if your count of 300 includes small placoliths and/or F. profunda. Reviewer #2: The manuscript "Coccolithophore assemblage composition during the Greenland Interstadial–Stadial 20 transition and their response to the Youngest Toba Tuff (YTT) supereruption ~74,000 years ago in the northeastern Arabian Sea" by Guballa et al. presents a high-resolution dataset aimed at enhancing the understanding of coccolithophores during the stadial/interstadial transition and the YTT supereruption. Statistical and signal analyses are also used to elucidate and improve the primary relationships between coccolithophores and environmental factors. The authors describe the data in great detail and illustrate their findings with an adequate number of high-quality figures. The references are up-to-date. I fully agree with the authors' conclusion that “the eruption was not the trigger for the GI-20 to GS-20 transition.” All my comments and suggestions are intended to improve the quality of the paper, which needs clarification in some parts of the text. Line 22: “annually resolved” – The mean resolution is 7.85 years, and for the first 60 samples (before YTT), it is 7.9 years. I strongly suggest using “decadal resolved” not only in line 22 but throughout the text, particularly in the “Materials and Methods” section. “Spectral analyses”: This is a critical point. The authors, using “redfit,” find a ~20-year periodicity in the first 60 samples (before YTT), but do not check (e.g., wavelet analyses) if this periodicity is consistently present throughout the interval. I have performed some checks: interpolating samples at 7.9 years (no artificial decreases were observed) and performing wavelet analysis, the ~20-year periodicity is barely visible only in the first 10 samples of the interval. Consequently, I think that this 20-year periodicity is negligible and useless (probably a multiple of the 11-year periodicity but impossible to check due to the “low” resolution). Conversely, applying the Ensemble Empirical Mode Decomposition algorithm, I have found very interesting results in the IMF. Notably, there is a ~70-year periodicity in G. oceanica and E. huxleyi, showing a continuous anti-correlation (in line with their respective ecological preferences) in cross-wavelet analyses. I strongly suggest performing new signal analyses, especially since the authors noticed the effect of the 70-year periodicity (line 330) but did not fully explore the potential of this signal. Line 126: “using coccolithophore species that were consistently present” – Please specify the taxa. Line 384: “the interpretation of the abundance changes in H. carteri …..” – In my opinion, the authors report interesting data on H. carteri. I suggest referencing Bonomo et al., Marine Micropaleontology, https://doi.org/10.1016/j.marmicro.2021.101995 (see station 25). This paper reports (living coccoliths) an interesting and comparable result for H. carteri. Notably, the abundance of H. carteri (inside the mini slump interval) vs. small placoliths (E. huxleyi) shows comparable results, indicating that the coccolithophore assemblages exhibited an inversion of dominance, characterized by low E. huxleyi vs. relatively high abundance of H. carteri. Line 453 “Interdecadal cycles in the coccolithophore record during GI-20”: This chapter must be completely revised based on new signal analyses (see above) and consequently, the “Conclusion” chapter. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Mário Cachão Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
|
| Revision 1 |
|
Coccolithophore assemblage composition during the Greenland Interstadial–Stadial 20 transition and their response to the Youngest Toba Tuff (YTT) supereruption ~74,000 years ago in the northeastern Arabian Sea PONE-D-24-25299R1 Dear Dr. Guballa, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Alessandro Incarbona Academic Editor PLOS ONE |
| Formally Accepted |
|
PONE-D-24-25299R1 PLOS ONE Dear Dr. Guballa, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Professor Alessandro Incarbona Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .