Peer Review History
| Original SubmissionSeptember 25, 2023 |
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PONE-D-23-31127Evolution of cardiac tissue and flow mechanics in developing Japanese MedakaPLOS ONE Dear Dr. Vlachos, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. My sincere apologies for the slow progress of this review. It took a lot longer than expected to recruit appropriately qualified reviewers who had the time to contribute to the review process.As you will see, both reviewers have raised some critical points that should be addressed completely before we reconsider this manuscript. Essentially there are some errors and missing details and also there is a general need to clarify the presentation of central experimental approaches. Also, I would recommend that the authors pay some attention to resolving one key comment of Reviewer 1, namely the need to explain in more detail, how this manuscript goes beyond just being a descriptive piece of work and instead generally improves our understanding of embryonic heart development. Also, how may the methodology that has been used help future studies in this field.In other words, the authors need to spend a little bit more effort to “sell” the importance of this work for the field… Please submit your revised manuscript by May 23 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please note that PLOS ONE has specific guidelines on code sharing for submissions in which author-generated code underpins the findings in the manuscript. In these cases, all author-generated code must be made available without restrictions upon publication of the work. Please review our guidelines at https://journals.plos.org/plosone/s/materials-and-software-sharing#loc-sharing-code and ensure that your code is shared in a way that follows best practice and facilitates reproducibility and reuse. 3. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: I Don't Know Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Evolution of cardiac tissue and flow mechanics in developing Japanese Medaka Authors: Sreyashi Chakraborty1, Sayantan Bhattacharya2, Brett A. Meyers1, Maria S. Sepulveda3, Pavlos Vlachos1,4* The manuscript "Evolution of cardiac tissue and flow mechanics in developing Japanese Medaka” uses image analysis of image sequences obtained with high speed cameras to calculate blood flow and pressure in the developing medaka heart. The presented data provide interesting parameter analysis during embryonic heart development. The manuscript is of mainly descriptive nature reporting a specialized methodology without reaching novel conclusions on heart development or function. The authors should provide a conclusion why their results are relevant for a study of embryonic heart development, and explain how their work goes beyond being mostly descriptive. It would be good to provide an outlook on how they envision that their methodology will contribute to an analysis and understanding of heart development and function. Nevertheless this work is of interest for the wide spectrum of readers of PlosOne and thus merits publication after some revision. minor points line 91: The authors should specify the strain used for this study. Several highly inbred strains are available for medaka. Use of an inbred strain allows to keep variance during analysis low which is important for acquisition of quantitative data. line 92: please give details what “continuous oxygen supply”means. Does this refer to continuous water circulation? line 100: were any measures taken to improve transparency of the chorion or rather reduce chorion induced image distortions when imaging embryos prior to hatching? lines 103 ff: the imaging methodology of unhatched and hatched embryos/hatchling has to be be described better: in which medium were the embryos immersed during imaging? Was a climate chamber used to keep T constant? Were hatchlings anesthetised during the imaging to prevent moving. How was a imaging of a lateral view achieved in the actively swimming hatchlings? line 150 the terms AVC and OFT need an introduction here for the understanding line 195: give a definition of hematocrit for the understanding line 278: here is the place to use the term diastole together with “ventricle filling cycle”. Reviewer #2: The provided manuscript presents a study of the evolution of a set of biomechanical characteristics during cardiac morphogenesis in the Japanese Medaka. Using microscopy particle image velocimetry quantifications, 2D viscous fluid velocity fields in the valve regions were reconstructed; based on which pressure fields and endocardial wall strains at several developmental time points were calculated. The authors demonstrated that pressure drops, and the relationship between pressure and strain can be used to distinguish developmental time points. L27-L28: The authors mention that “The effects of pressure drop [...] triggering cardiac morphogenesis in a teleost heart species are poorly understood”, but they do not further consider this in their manuscript. As such, it is misleading and should be altered. L40-L42: Missing reference(s) L42-L45: Missing reference(s) L47-L49: Missing reference(s) L58-L59: “viscous L61-L62: “[...] because the [opacity of the] fish’s eyes and head blocked [visibility of] a part of the ventricle.” L95: Missing concentration of diluted saline solution L115: “RBC” - abbreviation not previously defined/introduced L119-L122; Figure 1: Scale bars are missing in all panels L124: “HR” - abbreviation not previously defined/introduced L126: Missing reference for parameter value (blood density) L127: “EF” - abbreviation not previously defined/introduced Equation 1: The assumption of cylindrical ventricle area and volume appears to be unjustified, as its shape deviates from tubular already one day post-fertilization (1dpf). The authors themselves show in their Figure 2b-d sketches of non-cylindrical ventricles. L131-L156: A visualization of the image processing steps would have been beneficial for the readers to understand the effect of the filtering. L157-L165; Figure 2: On which sources of information are the sketches based? L203: “ [...] as a function of hematocrit [percentage] (Ht[%]) [...]” Equation 7: Not referenced in the text; Δ is not introduced; the first two terms on the right-hand side of equation 6 mentioned in L220-L221 as being negligible are still present. L226: “Writing in terms of the [dimensions] [...]” L229; Equation 10: Should add P= M/(LTT), = M/(LT) and insert into equation 10 to show dimensions vanish. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Evolution of cardiac tissue and flow mechanics in developing Japanese Medaka PONE-D-23-31127R1 Dear Dr. Vlachos, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Nicholas S. Foulkes, D.Phil Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-23-31127R1 PLOS ONE Dear Dr. Vlachos, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Nicholas S. Foulkes Academic Editor PLOS ONE |
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