Peer Review History
| Original SubmissionNovember 30, 2023 |
|---|
|
PONE-D-23-37288Effectiveness of Interactive Voice Response-Call for life mHealth tool on adherence to Anti-Retroviral Therapy among young people living with HIV: A randomized trial in UgandaPLOS ONE Dear Dr. Bwanika Naggirinya, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ==============================Editor's comments Bwanika et al Please follow the journal formats and be concise Be very clear with the sample size determination: You have two outcomes (viral load suppression and retention). You state the difference between arms though not showing whether on viral load or retention! How are both outcomes taken care of in the sample size estimation? Have a clear section on randomization concealment. Line 167/168 talks of a final model! what was in this model and how was it estimated? Please note that the write-up should at all times compare between arms. Why include p-values in the baseline table? what do they mean? please check on how to report the baseline table of randomized controlled trials. Please submit your revised manuscript by Mar 08 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Andrew Max Abaasa, Ph.D. Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please note that PLOS ONE has specific guidelines on code sharing for submissions in which author-generated code underpins the findings in the manuscript. In these cases, all author-generated code must be made available without restrictions upon publication of the work. Please review our guidelines at https://journals.plos.org/plosone/s/materials-and-software-sharing#loc-sharing-code and ensure that your code is shared in a way that follows best practice and facilitates reproducibility and reuse. 3. We note that the grant information you provided in the ‘Funding Information’ and ‘Financial Disclosure’ sections do not match. When you resubmit, please ensure that you provide the correct grant numbers for the awards you received for your study in the ‘Funding Information’ section. 4. Thank you for stating the following in the Competing Interests section: "I have read the journal's policy and the authors of this manuscript have the following competing interests: RPR discloses that Infectious Diseases Institute received funds from Janssen, the Pharmaceutical Companies of Johnson and Johnson for Call for Life Projects and other Project Research." Please confirm that this does not alter your adherence to all PLOS ONE policies on sharing data and materials, by including the following statement: "This does not alter our adherence to PLOS ONE policies on sharing data and materials.” (as detailed online in our guide for authors http://journals.plos.org/plosone/s/competing-interests). If there are restrictions on sharing of data and/or materials, please state these. Please note that we cannot proceed with consideration of your article until this information has been declared. Please include your updated Competing Interests statement in your cover letter; we will change the online submission form on your behalf. 5. In the online submission form, you indicated that [The data underlying the results presented in the study are available from the corresponding author, after acceptance of the article, since this is part of her doctoral research.]. All PLOS journals now require all data underlying the findings described in their manuscript to be freely available to other researchers, either 1. In a public repository, 2. Within the manuscript itself, or 3. Uploaded as supplementary information. This policy applies to all data except where public deposition would breach compliance with the protocol approved by your research ethics board. If your data cannot be made publicly available for ethical or legal reasons (e.g., public availability would compromise patient privacy), please explain your reasons on resubmission and your exemption request will be escalated for approval. 6. Please amend the manuscript submission data (via Edit Submission) to include author Dr. Maria Sarah Nabaggala. 7. We note that [Figure 1] in your submission contain [map/satellite] images which may be copyrighted. All PLOS content is published under the Creative Commons Attribution License (CC BY 4.0), which means that the manuscript, images, and Supporting Information files will be freely available online, and any third party is permitted to access, download, copy, distribute, and use these materials in any way, even commercially, with proper attribution. For these reasons, we cannot publish previously copyrighted maps or satellite images created using proprietary data, such as Google software (Google Maps, Street View, and Earth). For more information, see our copyright guidelines: http://journals.plos.org/plosone/s/licenses-and-copyright. We require you to either (1) present written permission from the copyright holder to publish these figures specifically under the CC BY 4.0 license, or (2) remove the figures from your submission: a. You may seek permission from the original copyright holder of Figure 1 to publish the content specifically under the CC BY 4.0 license. We recommend that you contact the original copyright holder with the Content Permission Form (http://journals.plos.org/plosone/s/file?id=7c09/content-permission-form.pdf) and the following text: “I request permission for the open-access journal PLOS ONE to publish XXX under the Creative Commons Attribution License (CCAL) CC BY 4.0 (http://creativecommons.org/licenses/by/4.0/). Please be aware that this license allows unrestricted use and distribution, even commercially, by third parties. Please reply and provide explicit written permission to publish XXX under a CC BY license and complete the attached form.” Please upload the completed Content Permission Form or other proof of granted permissions as an "Other" file with your submission. In the figure caption of the copyrighted figure, please include the following text: “Reprinted from [ref] under a CC BY license, with permission from [name of publisher], original copyright [original copyright year].” b. If you are unable to obtain permission from the original copyright holder to publish these figures under the CC BY 4.0 license or if the copyright holder’s requirements are incompatible with the CC BY 4.0 license, please either i) remove the figure or ii) supply a replacement figure that complies with the CC BY 4.0 license. Please check copyright information on all replacement figures and update the figure caption with source information. If applicable, please specify in the figure caption text when a figure is similar but not identical to the original image and is therefore for illustrative purposes only. The following resources for replacing copyrighted map figures may be helpful: USGS National Map Viewer (public domain): http://viewer.nationalmap.gov/viewer/ The Gateway to Astronaut Photography of Earth (public domain): http://eol.jsc.nasa.gov/sseop/clickmap/ Maps at the CIA (public domain): https://www.cia.gov/library/publications/the-world-factbook/index.html and https://www.cia.gov/library/publications/cia-maps-publications/index.html NASA Earth Observatory (public domain): http://earthobservatory.nasa.gov/ Landsat: http://landsat.visibleearth.nasa.gov/ USGS EROS (Earth Resources Observatory and Science (EROS) Center) (public domain): http://eros.usgs.gov/# Natural Earth (public domain): http://www.naturalearthdata.com/ Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: No Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: No Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: No Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: General comments: This manuscript reports the results for a trial of an mHealth intervention for young people living with HIV. Overall, I believe this manuscript has some merit, but I have some concerns about the analyses, design, and reporting. Regarding the analyses, there is no information in the statistical methods section about which statistical methods were used. This is important for determining how significance testing was done, confidence intervals were calculated, and whether anything was done to assess differences between study characteristics. The latter is very important since Tables 3 and 4 suggest there might be potential confounders, i.e., other explanations for the differences that are found. Best I can tell, no multivariable analyses have been performed and I think the manuscript would benefit from those, even if they come to the same conclusion as the current analyses. I also feel as though not having full baseline virology data is problematic. Not having the baseline data means it is not possible to know the changes in suppression from baseline to endline. It could be that the intervention group had a greater percentage of people with suppressed viral loads at baseline and, hence, were at greater likelihood of having a suppressed viral load at endline. I'm not sure how to rectify this, but this seems like a major problem to me. Finally, PLOS ONE does not copyedit manuscripts and, as stated in publication criterion #5 (https://journals.plos.org/plosone/s/criteria-for-publication#loc-5), can reject manuscripts without clear descriptions. There are some incomplete sentences and strange capitalization throughout. Some parts feel almost pasted in. All of this will need to be rectified and greater care taken with the exposition. Furthermore, the introduction could be shortened. I think the first and last paragraphs are good, but the middle is too detailed. I suggest condensing this part down into a couple paragraphs by either making only the most salient points or by summarizing the points made in as few words as possible and letting the references do the describing. Finally, I thought the subsections (e.g., "Standard of Care (Usual Care) Arm") were useful, though one is not needed for every paragraph. I would trim down the use of these somewhat and then convert the remaining to subsection headers on their own lines and in italics as opposed to how they are in the text right now. Specific comments: 1. (line 17) I didn't understand the clause "month 6 and 12". 2. (lines 94-98) I don't think "Health" and "Hospital" should be capitalized when they are not part of a proper noun. 3. (line 108) Please describe the algorithm or program that was used to randomize the order of the envelopes. 4. (line 132) I don't believe "Intervention" should be capitalized. 5. (lines 138-139) There should be an ethics section of the manuscript that includes IRB and trial registration as well as full information on how consent and assent were collected. 6. (lines 143-144) Again, a strange sentence when describing the month 6 and month 12 visits. 7. (lines 147-152) These two sentences are both incomplete. Plus, the openepi.com reference should be included in the bibliography and, again, strange capitalization. I suggest writing these as complete sentences and not just dumping output in the manuscript. 8. (lines 158-159) Run-on sentence. I think this sentence is supposed to define ITT but it does not. 9. (lines 165, 167) Why are you using different definitions of statistically significant? 10. (line 186, table 1) Significance testing between intervention groups is generally frowned upon because a non-significant p-value does not indicate that groups are the same. For info on the topic in relation to baseline imbalance in randomized trials see Altman, https://doi.org/10.2307/2987510 and Senn, https://doi.org/10.1002/sim.4780131703. My usual recommendation is to remove the significance testing from tables like this and use standardized mean differences (SMD) to assess imbalance (see Austin, https://doi.org/10.1080/03610910902859574). Most often, I see authors using an SMD of 0.1 or 0.2 as a threshold for assessing imbalance, though this could vary by field. 11. (lines 230-239) I believe this should be in the discussion section and not the results section. Reviewer #2: The manuscript carries an important message in good English and is a result of a well conducted RCT. However it needs to edited to bring into a good standard for publication. The authors need to adhere to standard structure of the journal and ensure that tables are standalone with adequate description. Importantly they need to tailor the introduction to relevant information only. If the edits suggested are implemented, I think the manuscript will be of a good enough standard for publication. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
|
| Revision 1 |
|
PONE-D-23-37288R1Effectiveness of Interactive Voice Response-Call for life mHealth tool on adherence to Anti-Retroviral Therapy among young people living with HIV: A randomized trial in UgandaPLOS ONE Dear Dr. Bwanika Naggirinya, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jun 07 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Andrew Max Abaasa, Ph.D. Academic Editor PLOS ONE Additional Editor Comments: You have fairly responded to the issued raised by the editor and reviewers. Further revisions include; (1) Please go through your manuscript sentence by sentence and improve on the language (2) Why was Kiryandongo picked as the study district? Why those particular health centres? How were they selected from the many health centres in the district? (3) How and where was viral load (VL) testing done from? please have a section on viral loading testing. (4) Under ethics, what care was provided to participants with unsuppressed VL? (5) Be specific with your outcomes; in the outcomes section, you define primary and secondary outcomes. However, in the statistical analysis, other outcomes such as VL at month 6 crop up. Please state all outcomes under the outcomes section distinguishing between primary and secondary outcomes. (6) You need a convincing justification why you choose Per Protocol over Intention to Treat analysis (7) I know SMD had been suggested by a reviewer, however, you do not need to show statistical differences on baseline table characteristics for a randomized controlled trial. Only use this table for intended observation on randomization and decide as necessary. (8) Table 1 footnote, *only 75 participants had baseline VL, Statistical methods: sensitivity analysis was performed adjusting for baseline VL. How were missing VL handled. Besides the table shows more numbers with baseline VL when broken down by trial arm! (9) Conclusion; you emphasize adherence and retention and no mention of viral suppression? While adherence and VL are linked, one isn’t a direct substitute for the other. (10) What do you recommend from your trial [Note: HTML markup is below. Please do not edit.] [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
|
Effectiveness of Interactive Voice Response-Call for life mHealth tool on adherence to Anti-Retroviral Therapy among young people living with HIV: A randomized trial in Uganda PONE-D-23-37288R2 Dear Dr. Naggirinya We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Andrew Max Abaasa, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
|
PONE-D-23-37288R2 PLOS ONE Dear Dr. Bwanika Naggirinya, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Andrew Max Abaasa Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .