Peer Review History
| Original SubmissionJuly 23, 2024 |
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PONE-D-24-29225Expanding the Fluorescent Toolkit: Blue Fluorescent Protein-Expressing Plasmodium berghei for Enhanced Multiplex MicroscopyPLOS ONE Dear Dr. Heussler, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== ACADEMIC EDITOR: Kindly address the comments of the reviewers in detail. ============================== Please submit your revised manuscript by Nov 22 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf 2. PLOS ONE now requires that authors provide the original uncropped and unadjusted images underlying all blot or gel results reported in a submission’s figures or Supporting Information files. This policy and the journal’s other requirements for blot/gel reporting and figure preparation are described in detail at https://journals.plos.org/plosone/s/figures#loc-blot-and-gel-reporting-requirements and https://journals.plos.org/plosone/s/figures#loc-preparing-figures-from-image-files. When you submit your revised manuscript, please ensure that your figures adhere fully to these guidelines and provide the original underlying images for all blot or gel data reported in your submission. See the following link for instructions on providing the original image data: https://journals.plos.org/plosone/s/figures#loc-original-images-for-blots-and-gels. In your cover letter, please note whether your blot/gel image data are in Supporting Information or posted at a public data repository, provide the repository URL if relevant, and provide specific details as to which raw blot/gel images, if any, are not available. Email us at plosone@plos.org if you have any questions." 3. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This manuscript by Kodzo Atchou et al. describes the generation of two transgenic P. berghei (Pb) lines that express the blue fluorescent proteins (BFP) eBFP2 and mTagBFP2, respectively, and exhibit normal development through all life-cycle stages. The experimental design and methodologies employed are appropriate for the scope of this study, and results are presented in a logical manner with clear and informative figures. Given the availability of transgenic Pb lines expressing RFP, GFP, YFP (Mol Biochem Parasitol. 2013;191:44–52.) and CFP (Cell Host Microbe. 2015 Jul 8; 18(1): 122–131.), this study extends the existing repertoire of fluorescent protein (FP)-expressing transgenic Pb parasites, and the two BFP-expressing Pb lines offer a valuable novel tool for multiplexed studies on Plasmodium biology and parasite-host interactions. The following comments are for the authors consideration: 1. In IFAs presented in Fig.3 and Fig. S2, Hela cells infected with BFP- or mCherry-transgenic Pb parasites were fixed by paraformaldehyde, followed by staining with the primary and secondary antibodies. It is important to note that certain BFPs, such as eBFP2, are known to be sensitive to fixation procedures, which may result in a reduction of fluorescence intensity in IFA.In contrast, mTagBFP2 generally retains its fluorescence after fixation. Therefore, the comparison of fluorescent intensity between PbeBFP2 and PbmTagBFP2 parasites at 56 hpi, as shown in Fig. 3F, might be biased due to the differential impact of fixation and could not represent fluorescent intensity of two BFP-expressing Pb in the living cells. 2. In Fig. S2C, when PbmCherry parasites were employed as a negative control in IFA, both mCherry and Alexa Fluor 594 (anti-mouse Alexa Fluor 594 secondary antibody to detect mouse anti-LAMP1 antibody) were used together. However, the excitation and emission spectra of mCherry and Alexa Fluor 594 are very close, with significant overlap. There is a risk of cross-talk of their fluorescence signals. The authors should clarify how the fluorescence signals of mCherry and Alexa Fluor 594 were differentiated in this IFA? 3. At Lines 351-352, it is stated that “Coinfections of BFP-expressing sporozoites together with the control sporozoites showed no negative impact on either parasite line (Fig 5B-F).”. In Fig. 5B, the thresholds for gating the infected mouse RBCs with BFP and mCherry were set up using normal mouse blood. However, In Fig. 5E, the parasitemia of PbmTagBFP2 in the co-infected mouse were assessed without following the threshold setup in Fig. 5B. Additionally, the observed parasitemia of PbmCherry was significantly higher than that of PbmTagBFP2 in Fig. 5E (0.54% vs 0.10%), which doesn’t support the conclusion of similar parasite growth rates between the BFP-expressing Pb and PbmCherry during the liver and blood stages. It would be more informative to present the parasitemia levels of BFP-expressing Pb and PbmCherry in the co-infected mice over consecutive days, thereby providing a clearer comparison of growth rates. 4. In the “Materials and Methods”, at Lines 94 and Line 134, it is stated that “… the infected mouse was euthanized with CO2, and a heart puncture was used to collect the blood.”. The authors should clarify whether mouse euthanasia with CO2 is an appropriate method for blood collection by heart puncture. 5. Minor points: a. Typographical error, at Line 84, “5'hsp70-mTagBFP2-3'hsp7 cassette”. It should be 5'hsp70-mTagBFP2-3'hsp70. b. Typographical error, in legend of Fig. S1 (Line 588): “GIMO mother line pbANKA 230p 1956 locus”, it should be PbANKA 230p 1596 locus. At Line 589, “flanked by the selection marker yfcu”, the selection marker should be hdhfr::yfcu. c. In the legend of Fig. 1, the panel labels (E) and (F) need to be inserted into their appropriate positions within the legend. d. In the “Materials and Methods”, at Line 139, the Anopheles mosquito strain used in this study should be clearly indicated. e. In the legend of Fig. 3 (Lines 303-318), all the panel labels from (A) to (F) in the legend are not consistent with the figure itself and need to be corrected. f. In Fig. S1D, WT is not wide-type Pb, but is Pb GIMO mother line (1596cl1). In In Fig. S1E, the primers used for 3’UTR is not 3/10, and should be 6/10. g. References 16 and 25 are identical. Check all references to ensure no duplicates or errors. Reviewer #2: Summary Transgenic reporter lines expressing fluorescent proteins play an important role in characterizing the properties of malarial parasites during their unique life cycle. Traditionally, red and green fluorescent proteins have been used universally for reporter lines in malaria parasites. To enhance the fluorescent protein repertoire, the authors generated rodent malaria parasites expressing a blue fluorescent protein and investigated the basic properties of these parasites in the life cycle. Although this paper demonstrates the utility of blue fluorescent proteins in malaria research and contributes to the advancement of imaging research in this field, the reviewers believe that the paper needs to be revised as indicated in the following comments for publication: Major comments In the introduction and discussion in this paper, the description is limited to rodent malaria parasites. The reviewer believes that reporter parasites of human malaria parasites, such as P. falciparum, should also be mentioned. For example, are previous studies showing the expression of BFP in other Plasmodium species? Consideration should be given to the expression of BFP in Plasmodium falciparum. Line 297-298 Can the expression of the reporter in the liver stage of BFP2-expressing P. berghei be detected by live imaging? Can the intensity be compared with that of mCherry? A Figure summarizing live imaging images of BFP expression in the liver stage and an explanation of this imaging should be included in the manuscript. Minor comments Line 62, Table 1: The reference for the development of mTagBFP2 (Ref 23) appears to be cited, but was Ref on the development of eBFP2 cited? Line 68: Reference 27 is not a reference for BFP. Appropriate references should be cited accordingly. Line 141, 149, 164, 205: Further references need to be cited in the Materials and Methods section. Previous studies on oocyst formation, sporozoite motility, experiments with HeLa cells and flow cytometry should be cited. Line 79: Information indicating how mTagBFP2 and eBFPP2 were PCR-amplified is essential. What DNA was used as the template DNA? Have they been codon-optimized for malaria parasites? Line 232: ‘visibly’ should be ‘visible’. Line 320: ‘HeLa’ should be ‘HeLa cells’. Fig 3: References to Figure 3 appear to be incorrect throughout the manuscript. They should be double-checked and corrected. For example, Fig. 3E in line 284 should be 3AB. Fig.3: Legends for (A) and (B) are incorrectly described. Fig.3C: The captions left in the images are missing. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Yi Cao Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Expanding the Fluorescent Toolkit: Blue Fluorescent Protein-Expressing Plasmodium berghei for Enhanced Multiplex Microscopy PONE-D-24-29225R1 Dear Dr. Heussler, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Harvie P. Portugaliza, D.V.M., Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-24-29225R1 PLOS ONE Dear Dr. Heussler, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Harvie P. Portugaliza Academic Editor PLOS ONE |
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