Peer Review History
| Original SubmissionMarch 21, 2024 |
|---|
|
PONE-D-24-10391First-line antiretroviral therapy initiation for newly diagnosed people with HIV in the Netherlands: a retrospective analysis from 2016 to 2020.PLOS ONE Dear Dr. Oosterhof, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== ACADEMIC EDITOR: MAJOR COMMENTS Table 4. Adherence rate Here and so on in many other cases, the term adherence might be misunderstood in the manuscript. According to WHO, adherence “is the extent to which a person's behavior – taking medication, attending scheduled clinic appointments, following a diet and/or changing lifestyle – corresponds with care and treatment plans”. Compliance rate or compliance with Dutch guidelines could be more suitable. On the other hand, adherence is most appropriately used in Discussion (lines 258, 262, 263). In line with the third observation done by authors in Discussion (lines 282-287), I missed a detailed economic impact of the generic drugs. This calculation could be done from percentages known (and depicted in Table 3). How much decline can be attributed to the availability of generics? How much can be attributed to other factors in addition to the indicated small reduction in the price of STRs? For instance, some regimens (BIC/TAF/FTC, EVG/c/TAF/FTC, DRV/c+TAF/FTC,…) contribute unequally throughout the period. I recommend perform this calculation, which would improve the conclusions obtained. Figure 3 (cited in line 205) is missing. MINOR COMMENTS
Please submit your revised manuscript by Jun 09 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Carmen María González-Domenech, Ph.D. Academic Editor PLOS ONE Journal requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Thank you for stating the following in the Competing Interests section: “PO received personal consulting fees from ViiV Healthcare, Gilead, Merck Sharp, and Dohme. FW has been served on scientific advisory boards for ViiV Healthcare and Gilead Sciences. MvdV has served on advisory boards for Gilead Sciences (Merck, Sharp, & Dohme) and ViiV Healthcare. MvdV received independent scientific grant support from Gilead Sciences, Merck, Sharp, & Dohme, and ViiV Healthcare, all of which were paid to his institution (Amsterdam University Medical Centers, Amsterdam, Netherlands). KB received personal consultation fees from Merck, Gilead, and ViiV. KB has received a writing honorarium from UpToDate. The remaining authors declare that they have no conflicts of interest.” Please confirm that this does not alter your adherence to all PLOS ONE policies on sharing data and materials, by including the following statement: "This does not alter our adherence to PLOS ONE policies on sharing data and materials.” (as detailed online in our guide for authors http://journals.plos.org/plosone/s/competing-interests). If there are restrictions on sharing of data and/or materials, please state these. Please note that we cannot proceed with consideration of your article until this information has been declared. Please include your updated Competing Interests statement in your cover letter; we will change the online submission form on your behalf. 3. For studies involving third-party data, we encourage authors to share any data specific to their analyses that they can legally distribute. PLOS recognizes, however, that authors may be using third-party data they do not have the rights to share. When third-party data cannot be publicly shared, authors must provide all information necessary for interested researchers to apply to gain access to the data. (https://journals.plos.org/plosone/s/data-availability#loc-acceptable-data-access-restrictions) For any third-party data that the authors cannot legally distribute, they should include the following information in their Data Availability Statement upon submission: a) A description of the data set and the third-party source b) If applicable, verification of permission to use the data set c) Confirmation of whether the authors received any special privileges in accessing the data that other researchers would not have d) All necessary contact information others would need to apply to gain access to the data Additional Editor Comments: This manuscript retrospectively analyzed the antiretroviral therapy of initiation for naïve HIV patients diagnosed between January 2016 and December 2020. Type and agreement with guidelines by Dutch Department of Health and Human Services were assessed as well as monthly cost. It is a very interesting overview of that topic in the Netherlands. The manuscript is well-written but I have some major and other minor comments from myself and the reviewers, which should be addressed as much as possible before publication. MAJOR COMMENTS Table 4. Adherence rate Here and so on in many other cases, the term adherence might be misunderstood in the manuscript. According to WHO, adherence “is the extent to which a person's behavior – taking medication, attending scheduled clinic appointments, following a diet and/or changing lifestyle – corresponds with care and treatment plans”. Compliance rate or compliance with Dutch guidelines could be more suitable. On the other hand, adherence is most appropriately used in Discussion (lines 258, 262, 263). In line with the third observation done by authors in Discussion (lines 282-287), I missed a detailed economic impact of the generic drugs. This calculation could be done from percentages known (and depicted in Table 3). How much decline can be attributed to the availability of generics? How much can be attributed to other factors in addition to the indicated small reduction in the price of STRs? For instance, some regimens (BIC/TAF/FTC, EVG/c/TAF/FTC, DRV/c+TAF/FTC,…) contribute unequally throughout the period. Figure 3 (cited in line 205) is missing. MINOR COMMENTS 165 period. Three of the 27 treatment centers Three out of the 27… Centers firstly listed in Table 4 must fully be depicted as supplementary material. The results section includes some statements discussing the findings (from line 129 to 133; from line 151 to 154). They should be allocated in Discussion section. Table 3. Percentage of patients on DHHS-recommended initial regimens from 2016 – 2020 Percentages are shown only for each regimen but they must be given for all the options within them. In addition, the heading of this table may simply be “Patients on DHHS-recommended…”. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: 1. 114-123: Overuse of passive voice in this paragraph, should be changed to active voice to be better understood. 2. Discussion: I miss the explanation of why there is a greater use of TDF vs TAF in this population in spite of having, the second one, a better clinical profile of adverse events. This could affect the prize of HIV burden in long term. Try to explain this in few words. 3. Bibliography mistakes: - 417: avoid (London, England). - 422: avoid (London, England). - 435: avoid dots. - 437: 2021. 2021. - 438: c2023. - 440: c2023. - 442: Netherlands2022 - 452: avoid (London, England). - 480: BMJ Open. Reviewer #2: Oosterhof et al analyze the initial ART regimens in the Netherlands in a large cohort of 3,445 HIV naïve patients starting ART between January 2016 and December 2020.They observed an increasing tendence to prescribe integrase inhibitor containing regimens from 77.3% in 2016 to 87.8% in 2020. Most patients received STR regimens although with a decreasing rate from 81.3% in 2016 to 60.3% in 2020. The gMTRs showed a steady increase from 17.8% in 2018 to 37.8% in 2020. This fact implied a cost reduction of the first-line ART regimen per patient from 17.8% in 2018 to 37.8% in 2020. The adherence rate to DHHS-recommended initial regimens increased from 82.8% in 2016 to 90.0% in 2020, not influenced by the gMTRs prescription increase. Major points 1.This work reinforces previous studies showing that ART adherence rate is not always linked to STR and this is a key point of the manuscript. However all the enrolled patients received their ART once-daily (QD regimens) and this is important to emphasize in the discussion. The number of intake moments is important with perfect adherence linked to once-daily ART. 2.The fact that the STR and gMTR prescription data provided here represents the situation at the start of HIV therapy and not on the persistence of STR and gMTR is the main pitfall of the study. Could you provide some data on the number of ART switch per patient or study center and analyzed year ? Minor points 1. I do not see why 100% adherence to DHHS recommended regimens is not desirable. (pages 17, line 241,and 18, line 244.250). Perhaps this sentence could be changed to “ difficult to obtain” due to pregnancy-due specific ART regimens and some study protocols that pushed the ART from the DHHS recommendations. 2. “Finally , another limitation was that we analyzed the prescription of ART regimens rather than specific formulation” (Page 21, lines 326-327).Do you mean single antiretrovirals and not combined SRTs and gMTRs regimens when to mention specific formulations ? Reviewer #3: The authors present a retrospective study on first-line antiretroviral therapy for people newly diagnosed with HIV in the Netherlands. The article is well written and provides data of interest. Two minor consdierations - Please consider improving Figure 2. It is complex to interpret - Page 16, line 205: costs per person per month for initiating ART (Figure 3). I cannot find this figure ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
|
First-line antiretroviral therapy initiation for newly diagnosed people with HIV in the Netherlands: a retrospective analysis from 2016 to 2020. PONE-D-24-10391R1 Dear Dr. Piter Oosterhof, PharmD, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Carmen María González-Domenech, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Thank you for properly addressing all the issues pointed by the reviewers and the academic editor. In addition, the minor mistakes noticed have also been amended. Thus, your manuscript is ready to be publised by PLoS One journal in the current version. Thank you for submitting your valuable work to our journal. |
| Formally Accepted |
|
PONE-D-24-10391R1 PLOS ONE Dear Dr. Oosterhof, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Carmen María González-Domenech Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .