Peer Review History
| Original SubmissionJanuary 5, 2024 |
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PONE-D-24-00544Habitat occupancy of the threatened Diademed Plover (Phegornis mitchelli) is not affected by llama grazing or peatland size, but declines with peatland humidityPLOS ONE Dear Dr. Pietrek, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by May 03 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Kind regards, Magdalena Ruiz-Rodriguez Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Thank you for stating the following in the Acknowledgments Section of your manuscript: "This work was funded by a grant of the Neotropical Bird Club and a Maxwell-Hanrahan award to Alejandro Pietrek." We note that you have provided funding information that is not currently declared in your Funding Statement. However, funding information should not appear in the Acknowledgments section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: "This work was funded with a grant from the Neotropical Bird Club (https://www.neotropicalbirdclub.org/) awarded to AGP. The sponsors did not play any role in the study design , data collection and analysis, decision to publish or manuscript preparation." Please include your amended statements within your cover letter; we will change the online submission form on your behalf. 3. Please include your full ethics statement in the ‘Methods’ section of your manuscript file. In your statement, please include the full name of the IRB or ethics committee who approved or waived your study, as well as whether or not you obtained informed written or verbal consent. If consent was waived for your study, please include this information in your statement as well. Additional Editor Comments: Dear Authors, This paper is suitable for publication, after performing some corrections. The English should be reviewed. Reviewer 1 has made several suggestions to improve the writting, which should be taken in consideration. This reviewer also has concerns about the statistical anañysis, given that it is included a variable (NDVI) that is not related to the predictions. Please, clarify this point. Reviewer 2 has some concerns about the hypothesis and discussion. I encourage authors to review the manuscript including the suggestions of both reviewers, to improve the manuscript, and then we'll perform a second review. Yours sincerely Magdalena Ruiz-Rodríguez [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: No ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This paper examines the habitat occupancy of a threatened and specialized species, the diademed plover, along peatlands in the Vilamas wetland, in High Andes. The study provides valuable data for the conservation of the diademed plover, especially considering the low information available for this species mainly because of its reluctance to human eye and the difficulty to access to their territories. I do not have major concerns about this paper, the methods are suitable and the main text is clear and concise. However, I have some minor concerns (see below) and some questions about methods. Why using the 4 NDVI variables in the models since you did not have any prediction about this? Indeed, you stated in page 9 that NDVI was included in the models but it was not linked to any initial hypothesis and it did not significantly associated to occupancy. I suggest to either directly remove all methods and analyses in relation to NDVI or to explain why you included NDVI in the models (hypothesis and prediction; in Introduction) and why you finally did not include it in ranked models (in Methods). Minor comments Since there is no track-numbering in the manuscript, I numbered text lines for each page. Comments are done following this numbering. Page 2 – Abstract Ln 2: Add the scientific name to diademed plover. Ln 5: “being well-suited to perform occupancy models”. Ln 6: diademed plovers. Ln 6: remove may. Ln 8: diademed plovers. Ln 12: These results are referred to survey data or model prediction data? If it is referred to survey data, it should be 47%. In this case change to: “Approximately 50% of the studied peatlands…” Ln 16: Add the meaning of NDWI. Ln 18: diademed plovers. Ln 18-20: Maybe join the two results in one sentence, saying that your 2 predictions were not supported by data (namely plover occupancy was positively related to NDWI and negatively related to grazing). Page 3 Ln 6: “Understanding what factors determine species’ spatial distribution is an important question in population ecology”. Ln 7: “knowing where a species…” Ln 12: “Patches may be unoccupied for a number of reasons. For example, due to their abiotic conditions or the presence/absence of other species (1,2)”. Page 4 Ln 5: “constituting oases within…” Ln 5: remove “not surprisingly”. Ln 8: “However, Andean peatlands are now facing rapid changes driven primarily by regional aridization (16-18) and mining activities (19-21)”. Ln 10: add the species name of the invasive trout. Ln 11: “To address the consequences of these threats, we need…” Ln 17: 4,000 m above sea level (m a.s.l.). Page 5 Ln 5: remove “if any”. Ln 13: add coma after random effects. Ln 17: “are hypothetised to harbour…” Page 6 Ln 3: diademed plover. Ln 4: add the scientific name of vicuñas (Lama vicugna). Also, scientific name of llama is incorrectly written (Lama glama). Ln 7: “The aim of this paper…” Ln 14: “to ask whether they…” Ln 17: plovers instead of birds. Page 7 Ln 5: Do not mention here that you performed surveys, since they are described later in methods. Instead, you should start describing the study are (e.g. The study region is located at Lagunas de Villama…). Ln 9: “It was declared Ramsar site in 2000, and Important Bird Area (IBA) in … (add year)”. Ln 12: Maybe “arid cold desert”. Ln 12: “an extreme temperature amplitude”. Ln 14: “ranging from 100 to 300 mm per year. There are often…” Page 8 Ln 3: Maybe explain briefly types 1 and 2 to understand better the peatland ecosystem. Ln 5: Also, maybe explain briefly the Kolla (or Qulla) indigenous community; i.e. from where they come, their transhumance, etc. In this sense, non-native people could understand better the Andean peatland system. Figure 1: Add the scale in the two maps and the 4 cardinal directions. Ln 10: “and females lay 2 eggs…” Ln 13: provision or feed instead of raise. Ln 15: plovers instead of they. Page 9 Ln 4: “using the Google Earth Engine (GEE) platform”. Ln 6: topographic position index (TPI). Ln 9: use only TPI, as you described it before. Ln 11: “The spectral variables include…” Also, remove all methods concerning NDVI (see my general comments). Ln 13: add the resolution in pixels of Lansat-8 images. Ln 14: explain how NDWI is calculated from Landast-8 bands. NDWI = (B3-B4)/(B3+B4). Ln 15: “We used NDWI as proxy to test our predictions…” Page 10 Ln 9: researchers instead of people. Ln 14: add the ID of permits/approval (here or in an ethic statement at the end of the manuscript). Ln 15: “The grazing pressure was estimated as the number of…” Ln 16: Did you note the presence of llamas/vicuñas in the afternoon while doing surveys? You mention that surveys were done until 17:00h. If no llama/vicuña was detected along the day, you should mention it. Ln 17: better not to refer to sheep equivalents as SE (because it can be confused with standard error). Simply refer as sheep equivalents. Page 11 Ln 6: add coma after observer. Ln 12: add the R version Ln 15: Number the 14 variables (8 statistics NDWI, NDVI, 5 spatial, grazing). Ln 16: Why is the reasoning behind the selection of the 4 variables selected? Page 12 Ln 5: reference the Appendix 1 when you mention the 24 fitted models. Ln 8: This sentence is a bit confusing, please, re-write. Ln 11: How covariates were standardized? Scaling? Describe it briefly. Page 13 General comment in results: why you do not present the data relative to grazing of llamas and vicuñas (sheep-equivalents)? I suggest to add descriptive statistics in results, as you mention later in the discussion some of the results. Ln 4: diademed plovers. Ln 4: 18 out of 40. Ln 5: 13 out of 40. Ln 6-9: move this part to methods and report here only the results relative to figure 2. Ln 15: Photograph instead of view. Also, it would be better if the margins of the plover photo match with the margins of the peatland photo. Ln 18: “both included NDWI as a covariate affecting occupancy”. Page 14 Ln 8: “and was also slightly better than the best ranked model (Table 1)”. Ln 11-14: You can remove this part and shorten saying that models including grazing as covariate did not perform better than the best ranked model (see appendix 1). Page 15 Table 1: Add a new row in the top to separate the two non-spatial models and the spatial model. Ln 1: “95% confidence intervals (in parentheses) of three models…” Ln 2: “The table shows results…” Ln 6: indicate that 0.58 is the estimate and 0.32-0.79 is the 95%-CI. Ln 7: indicating instead of suggesting. Ln 10: remove “i.e. humidity”. Also change to: “(Table 1; Fig. 3)”. Page 16 Figure 3: Better refer to Fig3a and Fig3b instead of left and right panel. Also remove the correlation in the figure legends as it is posted in the main text. Line 10: 33% instead of 32% (to report the same % as in results). Ln 11: “chose locations in their upper portions, near the headwaters”. Ln 12: number the two predictions: “We predicted that: (1) occupancy would increase…; and (2) occupancy would decline…” Ln 15: “unoccupied peatlands in their abiotic conditions, supporting…” Ln 16: two predictions instead of all predictions. Page 17 Ln 4-8: In this part of the discussion, you state that drier peatlands should support a lower food availability for plovers than more humid peatlands. However, neither in the introduction nor here you show a clear relationship between these two variables. The NDWI is a surrogate of humidity, but maybe it is not related to food abundance and/or availability in your study system. I would add that more studies are needed to examine the food resources for plovers in weatlands differing in humidity (or NDWI), so your results are maybe not “unexpected”. Ln 19: separate into two sentences. Page 18 Ln 1: Your ongoing work (58) examines the within-peatland migration or altitudinal migration in the Andes? If the first option is correct, I understand why plovers choose headwaters instead of lower parts of peatlands. I think references 58 and 59 are incorrectly numbered (58 should be 59 and viceversa). Ln 4: add scientific name (Charadrius nivosus). Ln 5: “with nests being initiated at those times…” Ln 7: start a new sentence after the reference 60. Ln 8: “nest flooding in several coastal species (61)”. Ln 12: should examine. Ln 16: separate into two sentences: “food availability. Diademed plovers…” Ln 17: Two observations would support this hypothesis”. Page 19 Ln 1: “include” is duplicated. Ln 3: should examine. Also, start this new paragraph directly with the grazing. Ln 5: Two reasons could explain the lack…” Ln 5: I do not see how the first reasoning can invalidate your findings, since llamas forage in the same period as plovers reproduce (December-February). One could expect some competitive exclusion by llamas, as they would pressure plover nests and/or territories. Ln 8: sheep-equivalents instead of se. Ln 8: in relation to the two reasonings, the lack of effect could be attributable to the fact that llamas and vicuñas were counted only in the morning, when starting the surveys. Maybe if you surveyed them during all day, grazing could affect plover occupancy. See my comment above. Ln 10: add the scientific names of dunlins and snipes. Ln 13: even if llamas exert a slight threat to nest success, this…” Ln 15: “pastoral way of life (…), may be essential for Diademed plover conservation in the mid-term”. Ln 20: remove the colon. Page 20 Ln 11: “Vilama peatlands are among the highest proportion of occupied peatlands across the species range”. Ln 15: “climate variability, including the El Niño-Southern Oscillation (ENSO) which strongly affects NW Argentina”. Ln 19: “affect bird’s occupancy and demography”. Reviewer #2: The goal of this paper is to identify peatland features that Diademed Plovers use during their breeding season when they establish delimited territories within peatlands. This study is intriguing, particularly for a species with limited information on its biology and ecology. I commend the authors for the extensive sampling effort undertaken for this research. I believe that the manuscript is publishable, but from my point of view, it could benefit from restructuring to organize ideas and enhance readability. Also, I am not a native English speaker, but I believe it requires an English formatting review. Some examples I suggest are: Introduction: 1- Rewrite the hypotheses paragraph, being more concise: "The hypotheses in this work are… The predictions are…" 2- Are there no other predation pressures on these sites for plovers aside from grazing? 3- On page 5, the sentence: “Importantly, their specific micro-habitat requirements remain largely unknown, and Diademed Plovers are often absent from peatlands that, to the human eye, seem identical to those where individuals are present (28)” It is not clear what is meant. 4- I recommend omitting the word “rare” when referring to the species, as it may confuse due to its conservation status, in the introduction section. 5- The species could be further characterized, by detailing their wintering and breeding areas. It would be beneficial to specify at which stage of the life cycle they inhabit these areas. Exploring their cohabitation with other species, potential competition, interrelations with other birds and/or animals, as well as the impact of grazing, would also be valuable. Methods: 1- Sentence: “Peatlands at Vilama can be classified as types 1 and 2 (44): they are generally dominated by plant communities adapted to high altitudes and extreme conditions and located in relatively steep areas” What would be types 1 and 2? 2- Sentence: “Each summer between late November and early February, Kolla shepherds from the neighboring community of Lagunillas del Farallón move up to Vilama to graze their llamas on the peatlands, but no people live at Vilama year- round.” I assume these are the same months plovers occupy the breeding area, but that should be clear. 3- Sentence: “Diademed Plovers make a rudimentary nest on the ground and lay two eggs in late spring. Diademed Plovers both forage and nest within the stream habitats; nests are placed on the cushion plants or among rocks in rocky patches. Both parents incubate eggs and raise the chicks, which are precocial. The breeding grounds of Diademed Plovers are often inaccessible to observers during the winter, and winter distribution data are scarce. In areas like Vilama, where many peatlands freeze in winter, they might be altitudinal migrants.” This information might be better moved to the introduction for a clearer understanding of the species' ecology. Discussion: 1- Sentence: “During the 2021–2022 breeding season, Diademed Plovers occupied about half of the peatlands at Vilama”. This would be half of the peatlands selected by the authors, right? 2- Sentence: “Although we predicted that peatland size would increase food availability to Diademed Plovers, we did not measure food availability, and Diademed Plovers may require only a small foraging area to meet their food requirements”. I recommend refraining from making predictions in this case, as without analyzing food availability, predicting outcomes in a changing environment is not feasible. While the plover may need relatively small foraging areas, it is possible that during the sampling period, prey availability was insufficient, or specific prey types or sizes were lacking. Without trophic studies, it may be best to avoid speculating on hypotheses, particularly for a species with limited knowledge and difficult access to research. It would be beneficial to note observations for future studies, without proposing specific hypotheses. 3- Sentence: “Grazing pressure was also absent from the most competitive peatland occupancy models. Two reasons stand out to explain the lack of effects of grazing on plover occupancy. First, llamas are not permanent at Vilama and are present only between late November and early February. Second, densities were overall low (2.84 se/ha ± 3) and highly variable, as llamas move freely among peatlands (the number of llamas on a peatland varied among surveys at the same peatland)”. However, they are present and moving randomly precisely during the breeding months, leading the authors to formulate a hypothesis with their prediction. Perhaps this occurrence was coincidental, or the llamas are in wetter peatlands, or the number of llamas grazing is insignificant for the plovers. This is the proposal put forward by the authors later: “From a conservation perspective, although we did not examine nest survival, Diademed Plovers have coexisted with short-term Indigenous pastoralism at Vilama for thousands of years, suggesting that even if were llamas are a slight threat to nest success, this threat would not be enough to impact the population viability. Moreover, preserving the Indigenous pastoral way of life (in the face of mining interests, for example), and the resultant habitat preservation this maintains, may be essential to the goals of plover conservation in the medium term. Diademed Plovers selected drier peatlands in the breeding season of 2021–2022, but selection patterns may vary temporally in the face of climate variability that includes the ENSO that strongly affects NW Argentina (18,66). The 2021–2022 breeding season was among the wettest in the previous decade. In drier years, small peatlands may become unsuitable (no running water) and peatlands that were too humid for Diademed Plovers in 2021–2022 (large NDWI values) may become suitable. Given that climate may frequently interact with local factors to affect occupancy and demographics of birds (67), it is important to follow up one-season occupancy surveys by replicating occupancy surveys over time, under contrasting conditions, to disentangle the impacts of climate on habitat selection by peatland- and other wetland specialist birds. More generally, understanding interactions between climate and habitat will be critical to understand the effects of climate change on bird populations in the High Andes.” This is crucial. I recommend beginning with these statements to form hypotheses and predictions, as this data does not arise from this study; instead, it should serve as the foundation of this study, just like the previous data on grazing. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. 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| Revision 1 |
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PONE-D-24-00544R1Habitat occupancy of the threatened Diademed Plover (Phegornis mitchellii) is not affected by llama grazing or peatland size, but declines with peatland humidityPLOS ONE Dear Dr. Pietrek, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jun 29 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Vitor Hugo Rodrigues Paiva, Ph.D. Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #3: (No Response) Reviewer #4: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #3: Yes Reviewer #4: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #3: Yes Reviewer #4: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #3: Yes Reviewer #4: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #3: Yes Reviewer #4: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors correctly addressed the review. I do not have additional comments, since the manuscript is now acceptable for publication. Reviewer #3: This revised paper provides valuable ecological information for an understudied species in a unique system. The study design and analysis are robust, and the writing is clear. I only have minor suggestions below. Line 16: Are there other plover species that occupy Vilama and the peatlands are important for their conservation as well? If you are referring to diademed plovers, perhaps change ‘plover conservation’ to ‘the conservation of this species’. Line 20: I do think the last paragraph of the Discussion provides some needed context that the 2021-2022 breeding season was wetter than average years and this could be noted in the Abstract. It felt like a big reveal at the very end of the paper that would have been nice to know up front. Line 87: Perhaps ‘greater diversity of micro-habitats’ instead of ‘more’ Figure 1: Maybe it’s just the resolution of the image that I am seeing in the document, but the different dot sizes are not very apparent and I’m wondering if size is worth including in the Figure without a legend indicating the magnitude of variation. In the caption, does the color refer to the latent spatial random effect (meaning more plovers in the red dots and less plovers in the blue dots)? I am not sure how to interpret “spatial random error”, but I would suspect you mean to say the value of the spatial effect at each site (positive or negative). It’s also interesting that there seems to be an east to west effect where there were more plovers in the eastern sites and less in the western sites. I’m wondering if the authors can hypothesize why there seems to be some clustering almost split in the middle of the surveyed sites. Line 126-130: Related to my previous comment, it would be beneficial to add how precipitation (and maybe temperature) during the study year compared to these general descriptions of climate conditions. Line 228: Rather than ‘basically the same’, state that the covariates on occupancy were the same as the 12 models with constant detection probabilities. Line 230: What coordinates were used for the spatial random effect? Was it the centroid of each peatland, the starting point, or something else? The centroid would seem to be the least affected by the size of the peatland. Line 234: Change ‘make’ to ‘made’ Line 260: Easier to fit in what way? Reviewer #4: This paper presents new data on factors that affect peatland use by a little-studied species, the Diademed Plover. The study is overall well-executed, and the statistical analyses are appropriate for the study system and research questions. I do not have any major concerns, and the authors have done a commendable job addressing previous reviewer questions. My only general question is to ask the authors how variable was grazing pressure among each peatland? Were there some peatlands that, for example, experienced zero grazing pressure, while others experienced heavy grazing pressure? And are counts of vicunas and llamas during each survey sufficient to characterize the grazing pressure experienced throughout the course of the season? I wonder if an effect could be detected if grazing pressure were measured using different methods, or if there were a wider range of grazing pressures present within the study system. Minor editorial comments given below: Abstract Lines 7-10: These two sentences are somewhat repetitive and can be condensed. Introduction Lines 74-76: This sentence is somewhat awkward and should be restructured. Paragraph lines 74-82: This paragraph provides some general discussion of modeling occurrence/occupancy. It could use another sentence or two at the end to explain the relevance of this background information to the current study, perhaps by explaining the appropriateness of the study system for this type of occupancy model. Line 95: coastal habitats? Lines 105-107: These two sentences are somewhat repetitive and can be condensed. Methods Line 137: What are these types? Line 155: included Line 172: encompassing Results Lines 276-278: The first half of this sentence could go to Methods section, paragraph lines 211-221 where this correlation is discussed. Also, I’m not sure why the plot of detections vs. NDWI min is included in Figure 3, given that this variable was discarded from the occupancy models due to correlation with NDWI mean. Discussion Line 315: Snowy Plovers Line 320: Oystercatcher Line 325: Plovers Line 330: similarly-sized Line 340: Dunlins and Wilson’s Snipes Line 341: “…shorebirds that show no defense against cattle like the Diademed Plovers” – wording is somewhat unclear. I suggest either omitting, or rewording as “shorebirds that, like the Diademed Plovers, show do defense…” Lines 369-371: Which could lead to a positive association with NDWI in drier years – perhaps important to note. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Jorge Garrido Bautista Reviewer #3: No Reviewer #4: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
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Habitat occupancy of the threatened Diademed Plover (Phegornis mitchellii) is not affected by llama grazing or peatland size, but declines with peatland humidity PONE-D-24-00544R2 Dear Dr. Pietrek, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Vitor Hugo Rodrigues Paiva, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
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