Peer Review History
| Original SubmissionJuly 30, 2023 |
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PONE-D-23-22982Early absolute lymphocyte count was associated with one-year mortality in critically ill surgical patients: a propensity score-matching and weighting studyPLOS ONE Dear Dr. Chao, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. The manuscript has been evaluated by three reviewers, and their comments are available below. The reviewers have raised a number of concerns that need attention. They request additional information on study design and revisions to the statistical analyses. Could you please revise the manuscript to carefully address the concerns raised? Please submit your revised manuscript by Dec 25 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Jennifer Tucker, PhD Staff Editor PLOS ONE Journal Requirements: 1. When submitting your revision, we need you to address these additional requirements. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. We note that the grant information you provided in the ‘Funding Information’ and ‘Financial Disclosure’ sections do not match. When you resubmit, please ensure that you provide the correct grant numbers for the awards you received for your study in the ‘Funding Information’ section. 3. Thank you for stating the following financial disclosure: "No" At this time, please address the following queries: a) Please clarify the sources of funding (financial or material support) for your study. List the grants or organizations that supported your study, including funding received from your institution. b) State what role the funders took in the study. If the funders had no role in your study, please state: “The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.” c) If any authors received a salary from any of your funders, please state which authors and which funders. d) If you did not receive any funding for this study, please state: “The authors received no specific funding for this work.” Please include your amended statements within your cover letter; we will change the online submission form on your behalf. 4. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly Reviewer #3: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Logic of the study could be expressed better. Hemogram derived inflammatory markers are associated with mortality of intensive care population (Journal of Intensive Care Medicine, 2019, 34.6: 511-513.). On the other hand, lymphocyte or lymphocyte based markers are also associated with mortality (Cirugía y cirujanos, 2022, 90.5: 596-601.). Thus, absolute lymphocyte count could be reasonable to study. p values of the hazard ratios along with 95% CI could be expressed in results. Reviewer #2: The manuscript Early absolute lymphocyte count was associated with one-year mortality in critically ill surgical patients: a propensity score-matching and weighting study studied the association between lymphocyte count and mortality of the critically ill surgical patients. There are some points to correct. Unit of Body mass index must be provided in table 1. Similarly, unit of sex must be stated as n(%). Same for other categorical variables. Discussion should be improved by discussing lymphocyte or lymphocye including indexs' role in patients requierd intensive care. Reviewer #3: Review Comments: I read with great interest the manuscript “Early absolute lymphocyte count was associated with one-year mortality in critically ill surgical patients: a propensity score-matching and weighting study”. In this manuscript the authors claim an association between absolute lymphopenia during the first week of ICU admission and long-term prognosis. This data is interesting, although it has been shown for other ICU populations and the hypothesis this would not be true for surgical patients and the reason why this research is relevant should be better explained in the background. Major comments 1. The use of the average value of ALC during the first week although pragmatic might introduce some bias in data interpretation. It is likely that during this first week a shift in lymphocyte counts occur. For the ones where more than 1 data point is available what is the variability of the values? If you just use the first ALC or the shift in ALC do you still have the same results? 2. Although this is an important population of surgical population, it is expected to have very different behaviors for the ones with elective surgery versus urgent surgery. This study has a disproportionate high rate of elective surgeries compared to emergent surgeries. This should be interpreted carefully also in the discussion. 3. In addition, it is likely that for the ones with urgent colo-rectal surgery, sepsis would be a frequent underlying diagnosis. Do you have data on this? Can sepsis explain partially your results? 4. Although interesting, it is unexpected that you found a higher association of low lymphocyte counts with a younger age. Do you have a bias towards age for other variables, such as distribution of type of surgery or sepsis? Did you check for interactions between these relevant variables that might explain this finding? I understand your reasoning in the discussion (line 199-206) to explain this finding, but have you also considered the possibility of a relevant bias here? If what you claim is true have you analyzed the association between ALC (first week, and probably and frequently first days) and short-term mortality? Minor comments 1. In flowchart 1 maybe the term mortality is not properly applied as you are mentioning absolute events. Death? 2. In the results section (lines 119-126) it would be useful to refer what you consider the non-surviving group (hospital? 90 days? 1-year?) and be clear about that. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Ibrahim Karagoz Reviewer #2: Yes: Bahri Ozer Reviewer #3: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-23-22982R1Early absolute lymphocyte count was associated with one-year mortality in critically ill surgical patients: a propensity score-matching and weighting studyPLOS ONE Dear Dr. Chao, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by May 24 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Ali Amanati Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. Additional Editor Comments: Dear authors, New comments were posted by the reviewer #4 and reviewer #5. So, the manuscripts require a round of revision. Please provide a point-by-point response to the reviewers' comments and highlight all the amends on your manuscript with yellow color. Yours [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed Reviewer #4: All comments have been addressed Reviewer #5: All comments have been addressed Reviewer #6: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes Reviewer #4: Yes Reviewer #5: Partly Reviewer #6: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #4: Yes Reviewer #5: Yes Reviewer #6: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #4: Yes Reviewer #5: Yes Reviewer #6: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #4: Yes Reviewer #5: Yes Reviewer #6: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: PONE-D-23-22982R1 id no article is carefully re-evaluated. Authors' revisions are satisfactory. It is publishable in the journal in the latest form. Reviewer #2: Authors adequately revised the manuscript according to my review recommendations. No other points to suggest further revision. I think it is acceptable for publication. Reviewer #4: Overall, the paper appears well-structured and comprehensive, covering various aspects of the study from methods to results and discussion. Here are some suggestions for improvement: 1- Ensure that the language throughout the paper is clear and precise. For example, in the Methods section, you could clarify the term "week-one ALC" to ensure readers understand it refers to the absolute lymphocyte count within the first week of ICU admission. 2- The statement regarding ethical approval is clear, but you could briefly mention any specific ethical considerations or guidelines followed during the study, especially concerning patient data and privacy. 3- It's important to provide details about how covariates were selected and why they were considered relevant. This could enhance the understanding of the readers regarding the adjustments made in the analysis. 4- While you've described the statistical methods used, consider providing a bit more context on why each method was chosen and how it contributes to the analysis. 5- Results Interpretation: Ensure that the results are interpreted accurately and avoid overgeneralization. For instance, when discussing mortality rates, it may be helpful to provide context by comparing them to similar studies or national averages. 6- Discussion: The discussion is insightful, but you could expand on potential implications of the findings for clinical practice or future research directions. Additionally, consider discussing any limitations in more detail and how they may have influenced the results. 7- Conclusion: The conclusion summarizes the findings well, but you could reiterate the key implications of the study and emphasize the need for further research to validate the findings and explore underlying mechanisms. Reviewer #5: The manuscript is highly valuable and well-written. The reviewers' comments were correctly and fairly fully applied, except for a few that have received little attention. It is anticipated that applying these suggestions will enhance the article. Reviewer #3: In this manuscript, the authors claim an association between absolute lymphopenia during the first week of ICU admission and long-term prognosis. This data is interesting, although it has been shown for other ICU populations and the hypothesis this would not be true for surgical patients and the reason why this research is relevant should be better explained in the background. It is preferable to more explain the importance of the topic for surgical patients in the background section. Q6. In the results section (lines 119-126) it would be useful to refer what you consider the non-surviving group (hospital? 90 days? 1-year?) and be clear about that. The phrase "patients deceased within one year" should not be replaced with the non-survivor group, but rather should be included in the explanation since the term non-survivor group is referenced later. Two supplementary remarks are provided below, which the authors should take into consideration: 1- In all related tables, the term "surgical patients" should be mentioned, for example, table 2 should be modified. 2- In the title, the term "absolute lymphocyte " is referenced, whereas, in the background, the study's objective is delineated as investigating the association between week-one ALC and long-term mortality, which appears to need correction. Reviewer #6: The article is well-written and structured, providing an in-depth analysis of the association between week-one ALC and one-year mortality in critically ill surgical patients. The authors have used appropriate statistical methodology to evaluate the desired association and have performed sensitivity analyses with different analytical strategies. Moreover, the authors have addressed all the concerns of the reviewers properly and comprehensively. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #4: No Reviewer #5: No Reviewer #6: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Early absolute lymphocyte count was associated with one-year mortality in critically ill surgical patients: a propensity score-matching and weighting study PONE-D-23-22982R2 Dear Dr. Wen-Cheng Chao, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Ali Amanati Academic Editor PLOS ONE Additional Editor Comments (optional): Editor comments The current article is scientifically valid in its current form. So, based on my opinion and the respected reviewers' comments could be published. Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #4: All comments have been addressed Reviewer #5: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #4: Yes Reviewer #5: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #4: Yes Reviewer #5: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #4: Yes Reviewer #5: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #4: Yes Reviewer #5: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #4: After a comprehensive review, I feel that this manuscript is now acceptable for publication. I appreciate the authors for addressing the existing concerns Reviewer #5: The authors' revisions are satisfactory. I don't have any other points to suggest for further revision. I believe the manuscript is now acceptable for publication. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #4: No Reviewer #5: No ********** |
| Formally Accepted |
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PONE-D-23-22982R2 PLOS ONE Dear Dr. Chao, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Professor Ali Amanati Academic Editor PLOS ONE |
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