Peer Review History
| Original SubmissionSeptember 28, 2022 |
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PONE-D-22-26758Could the mitotic count improve personalized prognosis in melanoma patients? PLOS ONE Dear Dr. Cozzolino, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Comments from PLOS Editorial Office: We note that one or more reviewers has recommended that you cite specific previously published works. As always, we recommend that you please review and evaluate the requested works to determine whether they are relevant and should be cited. It is not a requirement to cite these works. We appreciate your attention to this request. Please review this paper and address the following questions/criticism to strengthen the data. Please submit your revised manuscript by Dec 09 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Habib Boukerche, PhD Academic Editor PLOS ONE Journal requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Our staff editors have determined that your manuscript is likely within the scope of our Personalised Medicine Call for Papers. This call for papers aims to showcase the breadth of research within personalized medicine and its impact on innovating the healthcare horizon.. Additional information can be found on our announcement page: Personalized Medicine Call for Paper- PLOS Collection If you would like your manuscript to be considered for this collection, please let us know in your cover letter and we will ensure that your paper is treated as if you were responding to this call. Please note that being considered for the Collection does not require additional peer review beyond the journal’s standard process and will not delay the publication of your manuscript if it is accepted by PLOS ONE. If you would prefer to remove your manuscript from collection consideration, please specify this in the cover letter. 3. We note that the grant information you provided in the ‘Funding Information’ and ‘Financial Disclosure’ sections do not match. When you resubmit, please ensure that you provide the correct grant numbers for the awards you received for your study in the ‘Funding Information’ section. 4. We note that you have indicated that data from this study are available upon request. PLOS only allows data to be available upon request if there are legal or ethical restrictions on sharing data publicly. For more information on unacceptable data access restrictions, please see http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. In your revised cover letter, please address the following prompts: a) If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially sensitive information, data are owned by a third-party organization, etc.) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent. b) If there are no restrictions, please upload the minimal anonymized data set necessary to replicate your study findings as either Supporting Information files or to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. We will update your Data Availability statement on your behalf to reflect the information you provide. Additional Editor Comments : The introduction has to be re-‐structured, and the rationale for the study should be set clear. The manuscript should also be checked for types and grammars errors. Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This is an interesting study looking at the prognostic role of Mitoses in melanoma patients. This topic has been discussed in the past years , since it gave indication to SLN biopsy in the last AJCC classification (upstaging the T1a to T1b). The study is well conducted and the results and discussion sound interesting. There authors made correction with SLNB status but not with the involvement of SLN (micro macro metastasis). Please have a look at Quaglino et al . Surg Oncol. 2011 Dec;20(4):259-64. Is there a particular reason not to look at this association ? Please discuss. Reviewer #2: In this manuscript the authors examine the prognostic significance of mitotic rate in two cohorts of melanoma patients from the Veneto Cancer Registry. They show a correlation between increasing mitotic rate and various histopathologic factors in melanoma. They also show worse survival with increasing mitotic rate by Kaplan-Meier analysis. They investigate various cutoffs for mitotic rate in the entire cohorts, and in individual T categories. They conclude that mitotic rate does have prognostic significance, and may be used in individualized prognostic assessments of melanoma patients. Overall, the manuscript is useful in its reinforcement of the importance of mitotic rate. Attention to the following points is warranted to strengthen their conclusions, and also to address limitations in the available cohorts that precluded additional observations regarding the prognostic significance of mitotic rate. 1. A critical issue regarding assessment of mitotic rate, given the non-linear shape of its impact on survival, is the identification of optimal cut-points, both in the entire cohort of patients, as well as in specific T categories, as has been previously demonstrated (ref 14). To begin with, this should be discussed in greater detail in the Discussion section. While the authors examine this issue in some analyses, additional analyses are suggested. For example, in their K-M analysis of the entire cohort in Fig. 1, the authors examine different cutpoints for mitotic rate (0, 1, 2, 3-5; and >6). This analysis suggests the following “optimal” grouping or index for mitotic rate with differing survival: 0-2; 3-5; and > 6. It would be both interesting and important to analyze this further, both in univariate and multivariate analyses for the entire cohort. Also, given that the analysis of individual cutpoints only showed significant results in T2 patients, it would be interesting to examine this index in each T category to determine whether it would show a significant prognostic significance. 2. For the multivariate analysis of the entire cohort, it would be important to show the significance of mitotic rate (using the best individual cutpoint or the index mentioned in point 1 above) along with the other factors analyzed, so that its impact can be understood in the context of the other factors available. 3. As indicated above, there are significant limitations to the cohorts available that may preclude additional significant observations regarding the prognostic significance of mitotic rate in this analysis. One limitation is the preponderance of stage I cases (76% of the cohort), which in part accounts for 50% of the cases having a mitotic index of 0. Therefore, the proportion of cases with elevated mitotic rate is low. In addition, this results in smaller sample sizes for T3 and T4 cases, precluding a meaningful assessment of the prognostic impact in these subsets. These issues should be explicitly discussed. 4. What is the median follow up of the two cohorts? This should be explicitly stated, as it represents another major limitation of the study, especially in view of the predominance of stage I lesions, which can present with late relapses and deaths (i.e., beyond five years). 5. Table 1- 46% of patients were male. This is in contrast to most studies, which show a male predominance. Do the authors have any explanation for this finding? ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-22-26758R1Could the mitotic count improve personalized prognosis in melanoma patients?PLOS ONE Dear Dr. Cozzolino, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript within Apr 26 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Dr H. Boukerche, PhD Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #3: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #3: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #3: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #3: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #3: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #3: The assessed manuscript was a 'Revised Manuscript with Track Changes' in the document PONE-D-22-26758_R1_reviewer. In general, the objective is clear, and the methodology is appropriate. - In the abstract, the authors should add the time of overall survival evaluated (3-year overall survival) and use the term 'histological subtype' instead of 'type of morphology'. - In Statistical Methods, make it clear that the considered period for short-term overall survival was 3 years. - In Tables 1 and 2, it is important to include in the caption what 'Malignant (NOS)' means, once it is not a histological subtype of melanoma. - In the title of Table 2, there is no need for the phrase “p-values < 0.05 are reported in bold” - In Table 2, the percentage is not consistently represented (Some values have two numbers after the decimal point, others do not). - Fig.1 is mentioned in the text, the title appears, but I could not find either the figure or its caption. - Tables 3 and 4: highlight significant p-values in the adjusted model using bold, not red color. - In the discussion, it is more appropriate to write "increased mitoses per mm2 are associated with a higher risk of mortality, particularly in T2 patients," instead of "mitoses per mm2 are associated with an increased risk of mortality, particularly in T2 patients." - In the discussion, it is more appropriate to write "In particular, we observe that patients with a high mitotic rate are more likely to be older, male, have a melanoma lesion with a vertical growth pattern, nodular histological subtype, ulceration, greater tumor thickness, and an advanced stage," instead of "In particular, we observe that patients with a high mitotic rate are more likely to be older, male, have a melanoma lesion with a vertical growth pattern, ulceration, greater tumor thickness, and an advanced stage." - In the discussion, "... the presence of pre-existing nevi were found to be typical of lesions with sparse mitotic activity," however, there is no information about the absence or presence of pre-existing nevi in the results. Please, insert the data or remove this sentence. - In the discussion, reference 14 appears in the wrong place (page 72 of the document PONE-D-22-26758_R1_reviewer). - In the last paragraph of the discussion, it should be T2N0M0, not T2N0. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #3: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Could the mitotic count improve personalized prognosis in melanoma patients? PONE-D-22-26758R2 Dear Dr. Claudia Cozzolino, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Dr H. Boukerche, PhD Academic Editor PLOS ONE |
| Formally Accepted |
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PONE-D-22-26758R2 PLOS ONE Dear Dr. Cozzolino, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr Habib Boukerche Academic Editor PLOS ONE |
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