Peer Review History

Original SubmissionJune 27, 2023
Decision Letter - Benedicte Riber Albrectsen, Editor

PONE-D-23-20092Eurasian aspen (Populus tremula L.): Central Europe’s keystone species ‘hiding in plain sight’PLOS ONE

Dear Dr. Kusbach,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

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Two reviewers have commented on the text and found it almost ready for publication. 

Please make sure to follow their suggestions. 

In addition although I also find the text generally satisfactory, it  could need a careful edit to remove excess words and improve  language, and I suggest that a proper proof is performed before resubmission of the manuscript.

The legends are extremly short and more information about how to read graphs and tables is needed. Kindly go through each legend and add text so that each figure becomes self explanatory in the final paper. 

And on a minor note, I suggest you move the legends and place them together at  the manuscript; that will provide a  better overview of the manuscript text and its flow. 

I find that alll the figures have quite low resolution, and the font size appears far to small. This should be taken care of in the updated version of the manuscript.

==============================

Please submit your revised manuscript by Oct 13 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.
  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.
  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Benedicte Riber Albrectsen

Academic Editor

PLOS ONE

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1. You may seek permission from the original copyright holder of Figure 7 to publish the content specifically under the CC BY 4.0 license. 

We recommend that you contact the original copyright holder with the Content Permission Form (http://journals.plos.org/plosone/s/file?id=7c09/content-permission-form.pdf) and the following text:

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In the figure caption of the copyrighted figure, please include the following text: “Reprinted from [ref] under a CC BY license, with permission from [name of publisher], original copyright [original copyright year].”

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USGS EROS (Earth Resources Observatory and Science (EROS) Center) (public domain): http://eros.usgs.gov/#

Natural Earth (public domain): http://www.naturalearthdata.com/

Additional Editor Comments:

Two reviewers have commented on the text and found it almost ready for publication.

Please make sure to follow the suggestions by the reviewers.

In addition although I also find the text generally satisfactory, it could need a careful edit to remove excess words and improve language, and I suggest that a proper proof is performed.

The legends are extremly short and more information about how to read graphs and tables is needed. Kindly go through each legend and add text so that each figure becomes self explanatory in the final paper.

And on a minor note, I suggest you move tue legends to the end of the manuscript, so you peremit better overview of the manuscript text and its flow.

All figures have quite low resolution, and the font text is far to small. This should be taken care of in the updated version og the manuscript.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

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2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

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3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

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4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

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5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: Traditionally, aspen has received undeservedly little attention in both forestry and nature conservation. This paper fills this knowledge gap and demonstrates the importance of aspen for sustainable forest management and biodiversity conservation. The paper is based on accurate and extensive quantitative research. The authors used modern methods of data analysis appropriate to the task. The reliability of the conclusions is therefore beyond doubt. The paper makes a significant contribution to forest ecology and will be of interest to a wide range of readers with an interest in sustainable forest management and biodiversity conservation.

In my opinion, this paper is of a high scientific standard and is fully appropriate for PLOS ONE. I have no serious comments on the substance of the study, the presentation of the results and their visualisation.

Reviewer #2: Authors analysis the measured data and describe the ecological characteristics and geographical distribution of Eurasian aspen in the Czech Republic, as well as reveals the reasons for its low prevalence in Central Europe and elucidates the importance of the species in forest restoration. The manuscript has fluent language, reasonable structure, and a solid data foundation, which is a very interesting paper. I have just some minor suggestion:

(1) Many paragraphs in the results section. It is recommended to classifiy them and write under subtitles.

(2) What does the value in Figure 2 and Figure 3 mean? please explain them.

(3) It is recommended to retain 2-3 decimal places for the F and P values in the title of Figure 5.

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6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

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Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: Yes: Natalya Ivanova

Reviewer #2: No

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Revision 1

We followed all the suggestions/instruction of the Editor.

• We edited the text in terms of excess words and the language. Please see the file ‘Revised Manuscript with Track Changes’.

• We extended the legends properly.

• The legends were moved to the end of the manuscript however, it is recommended by the Plos One journal to place them right after they appear for the first time within the manuscript text.

• We remade the figures for the higher resolution, 300 dpi minimum and the font for a larger size.

The Reviewers’ comments.

There have been ‘no serious comments on the substance of the study, the presentation of the results and their visualisation’ by the Reviewer 1.

We followed all the comments provided by the Reviewer 2.

(1) Many paragraphs in the results section. It is recommended to classify them and write under subtitles. DONE.

(2) What does the value in Figure 2 and Figure 3 mean? please explain them. DONE.

(3) It is recommended to retain 2-3 decimal places for the F and P values in the title of Figure 5. DONE.

Attachments
Attachment
Submitted filename: Response to Reviewers.docx
Decision Letter - Carlos Rouco, Editor

PONE-D-23-20092R1Eurasian aspen (Populus tremula L.): Central Europe’s keystone species ‘hiding in plain sight’PLOS ONE

Dear Dr. Kusbach,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

Please submit your revised manuscript by Mar 22 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.
  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.
  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Carlos Rouco, PhD

Academic Editor

PLOS ONE

Journal Requirements:

Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice.

Additional Editor Comments:

Dear authors,

It seems that the manuscript has already undergone a second revision with very positive comments from both reviewers. In fact, one of them recommends its acceptance. Therefore, I recommend that the article be accepted after the authors carry out the minor revisions suggested by one of the reviewers.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #2: (No Response)

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2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: (No Response)

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: (No Response)

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: (No Response)

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: (No Response)

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: The authors responded to all my comments and significantly improved the paper. I have no further comments.

Reviewer #2: Thank you to the authors for their interesting manuscript. It seems that there are several areas that need improvement. Here are some suggestions:

Abstract: The abstract should be concise and clearly state the purpose, significance, methods, results, and conclusions of the study. The abstract is still a bit long in the current version.

Introduction: The objectives in the introduction section should be clearly defined. It would be helpful to separate the objectives into distinct sections with clear boundaries and clear meanings. The current version is hard to understand.

Methods: The methods section is currently lengthy and lacks hierarchy. It would be beneficial to divide this section into more subsections to clearly separate and describe the different content. Each subsection should have a clear objective that aligns with the research purpose.

Results: The subheadings in the results section should be more aligned with the research objectives stated in the introduction. Currently, it is difficult to see a correlation between the subheadings and the objectives. Additionally, the results should be presented in a way that clearly explains the significance and contribution of the findings. This will help readers understand the true importance of the numbers, analysis results, and charts.

Discussion: The subheadings in the discussion section should also be clearer. There should be less overlap and repetition within the sections. The discussion should focus on outlining the key findings, explaining their biological or ecological mechanisms, speculating on possible reasons, and addressing the study's limitations and future research directions.

The language of the manuscript is still a bit difficult for me, who is not a native English speaker. These suggestions are only personal in nature and do not negate the value of the manuscript. I hope these suggestions help improve the clarity and structure of the manuscript.

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: Yes: Natalya Sergeevna Ivanova

Reviewer #2: No

**********

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Revision 2

Dear Reviewer,

Please accept our revised version of the manuscript Eurasian aspen (Populus tremula L.): Central Europe’s keystone species ‘hiding in plain sight’ PONE-D-23-20092R1. We edited the text, please see the file ‘Revised Manuscript with Track Changes.’ We concentrated our revisions on improving the Abstract and clarifying objectives (Introduction) so that they align well with section headings (Results, Discussion), as suggested by you. A detailed accounting of our revisions can be found in notes below, as well as in the Track Changes version of our manuscript included here.

We followed all your suggestions.

Abstract: The abstract should be concise and clearly state the purpose, significance, methods, results, and conclusions of the study. The abstract is still a bit long in the current version.

The abstract text body in the review 1 followed the criterion of the 300 words of the PlosOne guidelines. It was not “a bit long” however, we shorten the text to current 236 words along with some rewording. We think, it is concise and states “the purpose, significance, methods, results, and conclusions of the study” enough.

Introduction: The objectives in the introduction section should be clearly defined. It would be helpful to separate the objectives into distinct sections with clear boundaries and clear meanings. The current version is hard to understand.

We deleted a potential confusion; one sentence before the specific goals. We also made the goals more concise by adjustment of (iii). We believe, goals are clearly defined. We are not sure how you want to “separate the objectives into distinct sections with clear boundaries and clear meanings”. What distinct section, where? It sounds like corrections in the next chapters as subsection.

Methods: The methods section is currently lengthy and lacks hierarchy. It would be beneficial to divide this section into more subsections to clearly separate and describe the different content. Each subsection should have a clear objective that aligns with the research purpose.

We created “the hierarchy” for the method section by dividing into subsections: Data sources, Aspen’s ecological characteristics and Analysis. We think the section is structured enough to be aligned with the research purpose.

Results: The subheadings in the results section should be more aligned with the research objectives stated in the introduction. Currently, it is difficult to see a correlation between the subheadings and the objectives. Additionally, the results should be presented in a way that clearly explains the significance and contribution of the findings. This will help readers understand the true importance of the numbers, analysis results, and charts.

We aligned the Result subheadings with the Methods subheadings. There is a correlation between the subheadings and the objectives.

We are not sure, whatdo you mean by “the results should be presented in a way that clearly explains the significance and contribution of the findings. This will help readers understand the true importance of the numbers, analysis results, and charts.” The numbers are clearly linked to the analytical methods, charts and properly reported.

Discussion: The subheadings in the discussion section should also be clearer. There should be less overlap and repetition within the sections. The discussion should focus on outlining the key findings, explaining their biological or ecological mechanisms, speculating on possible reasons, and addressing the study's limitations and future research directions.

We have tried to improve the subheading titles to be more expressive. We think there is no overlap and repetition within the sections; the Aspen ecological potential section speaks, besides basic statistics of aspen, about the broad ecological potential clear from the constructed heatmaps. This potential was confirmed by the PCA and Random Forest analyses with enumeration of important environmental factors; the Aspen’s ecological niche section speaks about delineation of the niche of aspen as the ecological and growth optimum using the previous heatmap. There is no overlap with the previous section; the Aspen current distribution and pathways for improved habitat section discusses aspen management history, present state and reasons for its current distribution. Then, practical silvicultural practices were suggested for restoration, conservation, and adaptive management.

We think, there is no space for speculations in the Discussion since the analysis is based on the real data!

We believe this study is improved enough for publishing at the PLOS ONE.

Thank you very much for the improvement of the paper.

Attachments
Attachment
Submitted filename: Response.to.reviewer_final.docx
Decision Letter - Janusz J. Zwiazek, Editor

Eurasian aspen (Populus tremula L.): Central Europe’s keystone species ‘hiding in plain sight’

PONE-D-23-20092R2

Dear Dr. Kusbach,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

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If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Janusz J. Zwiazek

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #2: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: The authors responded to all the comments and significantly improved the paper. Now the paper meets all the strict requirements of a scientific journal and can be published.

Reviewer #2: The authors have carefully revised the manuscript and can be accepted in its current form. Good luck!

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: Yes: Natalya Ivanova

Reviewer #2: No

**********

Formally Accepted
Acceptance Letter - Janusz J. Zwiazek, Editor

PONE-D-23-20092R2

PLOS ONE

Dear Dr. Kusbach,

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team.

At this stage, our production department will prepare your paper for publication. This includes ensuring the following:

* All references, tables, and figures are properly cited

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