Peer Review History
| Original SubmissionJuly 7, 2023 |
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PONE-D-23-21203Mammal responses to human recreation depend on landscape contextPLOS ONE Dear Dr. Marion, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Nov 05 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Thank you for stating the following in the Acknowledgments Section of your manuscript: “We thank Jason Fisher and Joanna Burgar for their important roles in the development of the research questions and methods. We thank members of the project steering committee for their support and feedback (Dallas Johnson, Dan Farr, Bonnie Drozdowski). Many staff at Innotech Alberta contributed to data collection and management (including Jason Fisher, Luke Nolan, Colin Twitchell, Greg Brooke). Members of the WildCo lab at UBC provided feedback on this research. Members of Jason Fisher’s ACME lab at the University of Victoria also contributed to field work. We thank Don Livingston (Alberta Environment and Protected Areas), Dragomir Vujnovic (Alberta Public Lands), Courtney Hughes (Alberta Environment and Parks), Graham Wylde (Alberta Environment and Protected Areas), Wonnita Andrus (Nature Conservancy of Canada), Brad Tucker (Alberta Environment and Parks), and Chad Willms (Alberta Environment and Parks) for sharing knowledge about the Bighorn and Castle areas. Chris Beirne and Patrick Thompson provided advice on statistical modelling. The Wildlife CAMERA project was funded by Alberta Innovates, Innotech Alberta, and Alberta Environment & Parks (now Alberta Environment and Protected Areas). Additional support for this research was received from the University of British Columbia and the Natural Sciences and Engineering Research Council of Canada (Canada Research Chair and Discovery Grant RGPIN-2018–03958 to A.C.B).” We note that you have provided funding information that is currently declared in your Funding Statement. 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The following resources for replacing copyrighted map figures may be helpful: USGS National Map Viewer (public domain): http://viewer.nationalmap.gov/viewer/ The Gateway to Astronaut Photography of Earth (public domain): http://eol.jsc.nasa.gov/sseop/clickmap/ Maps at the CIA (public domain): https://www.cia.gov/library/publications/the-world-factbook/index.html and https://www.cia.gov/library/publications/cia-maps-publications/index.html NASA Earth Observatory (public domain): http://earthobservatory.nasa.gov/ Landsat: http://landsat.visibleearth.nasa.gov/ USGS EROS (Earth Resources Observatory and Science (EROS) Center) (public domain): http://eros.usgs.gov/# Natural Earth (public domain): http://www.naturalearthdata.com/ Additional Editor Comments: Two expert reviewers have now provided their feedback and I invite you to answer their questions and suggestions point by point. Please clarify the field sampling strategy, as the infrequent camera trap check routine would have presumably resulted in many failures. The use of lure seems strange for a study that analyzes community responses of a variety of species including ungulates and smaller non-carnivorous mammals, which might presumably be deterred by the lure due to predation risk if the lure attracts carnivores. Also, there would be a decline in lure attractiveness which would be particularly pronounced given the infrequent camera trap servicing. Seasonal comparisons in the responses of mammals community could be affected by the season when the lure was placed, and when within the timeline of the season this occurred; timing of lure and addition of the lure might confound some of the effects of recreation on animal detection. Regarding the modelling approach, pseudo R2 is not a well established metric of model fit, please consider alternatives. Please define conditional effects (presented in Fig. 5) in the Methods section. Supplementary S5 Table 2 reveals a highly complex model output and suggests a possibly overparameterized model with a large number of parameter estimates recorded, and many interaction terms. Did you not run into model converge issues with this approach? I wonder how the all-inclusive approach you chose would compare to running the analysis in 3 sets of models - for each functional group (carnivores, ungulates, and smaller mammals) It appears that you did not account for imperfect detection probability and instead opted to model detection rate (frequency of images). Further explanations would be needed as to why the approach you chose is superior to a multi-species occupancy modelling framework that builds a detection history to model imperfect detection. Looking forward to a revised version. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Here the authors use extensive camera trap datasets from two study areas in Alberta to examine the impacts of recreation on a range of mammal species. This is valuable work tackling a complex issue and is particularly notable given the authors’ attempts to capture multiple aspects of recreation and their interactions with other anthropogenic factors (e.g., land management). The paper is also quite well written and a compelling read. I have a few suggestions below that I hope will help bolster an already strong piece of work. The authors make extensive use of a 500 m buffer area around each camera trap to summarize variables related to human use, forest cover, etc. They note that this buffer size was chosen to “have an overall understanding of the recreation impact”, but I’ll suggest that it would be helpful to provide a bit more justification for why this buffer size was deemed more appropriate than, say, 250 m or 1 km in providing such an understanding. As wildlife ecologists, I think we’re often tempted to just chose a single arbitrary buffer size when summarizing environmental covariates, but there is ample evidence from the landscape ecology world that this is actually an incredibly important assumption when quantifying species-environment relationships and that the buffer size chosen for a particular covariate can influence whether an effect is detected at all and even the directionality of that effect (i.e., positive vs negative influence of a covariate on species habitat use). See Jackson and Fahrig 2015 (Global Ecol Biogeogr, 24:52–63) for a very helpful (and troubling) review of this topic. All that said, I’m not suggesting there’s a need to go back and revisit the scale(s) at which your covariates were summarized. But it might be valuable to provide some additional justification for why the scale you chose is an appropriate one to apply across species and covariates. Relatedly, for your land cover covariates, were these just extracted at the single pixel associated with a camera trap point location? Why not also summarize these variables at a broader scale (e.g., as % cover)? This would then correspond with the assumption you’re making with the 500m buffer, i.e., that animals are integrating information on land cover across a broader scale than just their immediate vicinity when deciding whether to use the habitat associated with a given camera trap. Regarding the site-by-season species counts that were used as the response variable and summed across the full sampling period, I see that the authors included the number of days a camera was active as a term in the model, but, if there were substantial differences between the number of days cameras were active, I wonder if it might make more sense to turn your counts into a detection rate (i.e., number of detections per season divided by number of active days per season) to better account for differences in sampling period (which, if large, would add substantial amounts of noise to counts). L288-295: I think I understand the motivation for classifying a given camera site as being associated with motorized trails if even a single trail w/in 500m was motorized. But I wonder if this complicates your related trail density estimate in any way. Did the authors consider calculating separate trail density estimates for each trail type (motorized and non-motorized), given the expectation of differential impacts between the two types? This would then seem to obviate the need for a separate categorical trail type covariate. The authors do ultimately nod to the effects of diel cycle in driving wildlife responses to recreation in the discussion, but I wonder if they considered explicitly incorporating this in the analysis, e.g., by calculating counts (or rates…) by season and by day vs night. This could help explain several of this study’s findings regarding positive responses to high trail density. Other work (e.g., Nickel et al. 2020. Biol Cons, 241:108383) has shown that increased use of areas with high recreation intensity by many mammal species is also associated with increased nocturnality, presumably meaning wildlife are avoiding humans during the day but then using their trail networks at night. This could imply somewhat cryptic impacts on wildlife if temporal niches are constrained/forced to overlap. L380: R^2 estimates variance explained but isn’t really a measure of model fit. You could have a poorly fitting model (e.g., the specified data generating distribution does not actually match the distribution of observed data) that still explains a reasonable amount of variation. Posterior predictive checks are typically the preferred way of examining fit for Bayesian models. MINOR POINTS L104-106: This statement could use a reference. L132-145: The authors might consider restructuring their set of hypotheses as a numbered list. This could make it easier for the reader (and the authors) to refer back when interpreting the results (e.g., “we found support for Hypothesis 1…”) L179-180: “A systematic random design was used in both areas…” Not clear what the random aspect of the design is. Is this not just systematic sampling? L362: What are “multivariate response terms”? Do you mean coefficient estimates? I hope you find this useful. Best, Justin Suraci Reviewer #2: Review for PLOS ONE Mammal responses to human recreation depend to landscape context I really enjoyed reviewing this manuscript, that I found very interesting, very well written and using an original modelling approach. Results are relevant and will certainly contribute to the growing body of evidence regarding animal responses to outdoor activities and recreation, a potential impact of growing presence and intensity across the globe, with increasing conservation concern. However there is one main point that the authors did not consider that I think might hamper the results presented in the manuscript. I also have several minor comments. My main doubt regards the methodology used to extract the variable describing recreation intensity, namely the Strava variable. Corradini et al. 2021, that you cite, used a different approach to extract an index based on Strava data: they extracted and rasterised the Strava map, rather than using the number of reviews by the users. I am not sure that these two methods are equivalent, does the number of reviews by users really reflect the intensity shown by Strava in their maps? Furthermore, I have an even more serious concern regarding this point: how can you be sure that your index based on Strava data realistically reflects the intensity of recreation? This data certainly needs a validation! Corradini et al. 2021 validated their index using camera-trapping based on trails and found a positive correlation. But this positive correlation needs to be proven locally in every study area one may choose, since it is not guaranteed that Strava data will thoroughly reflect real on-the-ground frequentation of trails everywhere. To sum up: 1- I am not sure your method is equivalent to Corradini et al. 2021 one and equally representative; 2 – In any case this index should be validated against another method on-the-ground to make sure it gives a reasonably faithful picture of recreation in your area. Other comments: Lines 82-87: The whole introduction is interesting, well written and well documented. However here I think you lack at least to mention that also hunting is a major factor that can influence avoidance behaviours in mammals. Much research shows that fear of humans can be influenced by the presence and intensity of hunting in a specific area. Lines 104 – 112: Here I would strongly suggest to discuss the potential long-term effects that recreation might have on wildlife species, communities and ecosystem functions. Even when we observe clear avoidance behaviors in mammals towards human recreation we do not know if this avoidance leads to decreased fitness and hence diminishing population trends. One study that evaluated this aspect is Salvatori, M., Oberosler, V., Rinaldi, M., Franceschini, A., Truschi, S., Pedrini, P., & Rovero, F. (2023). Crowded mountains: Long-term effects of human outdoor recreation on a community of wild mammals monitored with systematic camera trapping. Ambio, 52(6), 1085-1097. https://link.springer.com/article/10.1007/s13280-022-01825-w, whose results are relevant also for the interpretation of you results in this manuscript. Additionally, I think that here or in the discussion another point that should be explored, also in relation to your results, is whether recreation can alter herbivory and predation patterns, resulting in direct consequences on other ecosystem components: a relevant subject also for protected area managers. One relevant work here is Di Nicola, W., Mols, B., & Smit, C. (2023). Human recreation shapes the local scale impact of ungulates on the carbon pools of a temperate coniferous forest. Global Ecology and Conservation, 46, e02574. https://www.sciencedirect.com/science/article/pii/S2351989423002093 Lines 183: Here you say that minimum distance from a trail was 50 meters but in Table 1 the minimum distances you report for the 2 areas are well below 50 meters. Line 188: I do not understand why you lured your camera trapping sites. The lure effect will have faded a lot before your sampling was ended, since you kept your cameras for more than one year. Luring the site would in this case bias sampling with a higher detection probability at the start of sampling that would have decreased as time passed by. Luring could also introduce biases towards certain species more attracted to the scent, and since you are using community modelling I do not think this is a wise choice. 192: So you controlled cameras only once per year? Didn’t this result in many battery failure and SD card filling? 242: I wonder if one could merge the two types of info, distance from trail and recreation intensity on that trail into a single index weighting both factors together, since animals could remain more distant specifically to those trails more intensely visited by humans. If I am not wrong you did not try the interaction Distance:Strava. 265: This sentence is not clear: what do you mean by entire camera trap sampling area? The area sampled by one single camera trap or the whole study area? Line 274: See my main concern regarding validation of the Strava data. Line 370: Camera days can also be conveniently shaped as an offset. Line 414: you accidentally put 2 ‘with’ at the end of this line. Line 437: I would put ‘(see Figure 2)’ to avoid confusion. Line 488: This last sentence is quite cryptic: why did you used it in combination with non-motorised trails then if it does not reflect vehicle passages at all? Line 523: Again, I feel you here overlook the possible effect of hunting in determining avoidance behaviours. Line 532-534: These two possible explanations seem completely in contrast one another. Line 539: I wonder whether this lack of effect derives from the weakness of the Strava variable you extracted in representing real recreation. Alternatively, it could be that your study areas have relatively low recreation intensity rates, compared to more human dominated landscapes like those of western Europe. Comparing and discussing the responses to recreation between North America and western Europe could also be very interesting. Line 546: What do you mean with this? What does this difference in home range size entail? Lines 555 – 557: I did not understand what you mean here with leveraging, please clarify. Line 622: ‘tpressure’ typo. Line 658: ‘ewithin’ typo. Line 664: Here you wisely mention the potential long-term effect on animal population demography potentially driven by avoidance of human recreation: see the paper I cited above that tackled this topic. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Justin Suraci Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". 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| Revision 1 |
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PONE-D-23-21203R1Mammal responses to human recreation depend on landscape contextPLOS ONE Dear Dr. Marion, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a minor revision of the manuscript that addresses the points raised during the review process. Thank you for adequately incorporating the reviewers suggestions. There are a few small pending comments from Reviewer 2 at the bottom of this message that should be quick to address. Please submit your revised manuscript by Mar 25 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Bogdan Cristescu Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: (No Response) Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: (No Response) Reviewer #2: Second round of review for PLOS ONE Mammal responses to human recreation depend on landscape context. I thank the author for revising their manuscript and for considering my comments. I think they addressed most of the points raised with sufficient detail. I think there are only a couple of points that would require further clarifications: Regarding the STRAVA variable, I still do not understand how you extracted the data and how these data relate to the heatmap. Were your data all those on which STRAVA creates the heatmap or only a part of it? Aren’t the segments linked to certain specific trails on which runners or bikers compete remotely through the app or do they have the same spatial representation of the heatmap? Are these data freely available or you had to purchase them? Since you say that your data are only some of those used for the heatmap I wonder if they are enough to get a thorough picture of outdoor recreation in your area. I think that the sentence “Long-term exposure to human disturbance can ultimately impact animal fitness (i.e., survival and reproduction success)” that you added is misleading. Exposure to human disturbance can for sure lead to decreased fitness but this is not a necessary outcome, indeed Salvatori et al. (2023) found that even under intense human frequentation and in presence of marked spatio-temporal avoidance behaviour mammal occupancy can increase both at species and community level within a protected area in Europe. I think that a little bit more discussion about the possible outcomes of human disturbance in the long term in light of this and other research could help understand the potential consequences for animal populations, which is why we do this kind of studies in the first place. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Justin Suraci Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Mammal responses to human recreation depend on landscape context PONE-D-23-21203R2 Dear Dr. Marion, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at http://www.editorialmanager.com/pone/ and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Congratulations on your paper. Kind regards, Bogdan Cristescu Academic Editor PLOS ONE |
| Formally Accepted |
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PONE-D-23-21203R2 PLOS ONE Dear Dr. Marion, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Bogdan Cristescu Academic Editor PLOS ONE |
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