Peer Review History

Original SubmissionOctober 4, 2023
Decision Letter - Hany Mahmoud Abo-Haded, Editor

PONE-D-23-30513Enhanced echocardiographic assessment of intracardiac flow in congenital heart diseasePLOS ONE

Dear Dr. Vlachos,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

Please submit your revised manuscript by Jan 21 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.
  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.
  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Hany Mahmoud Abo-Haded, MD

Academic Editor

PLOS ONE

Journal requirements:

When submitting your revision, we need you to address these additional requirements.

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at

https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and

https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

2. Thank you for stating the following financial disclosure:

“PPV received support for this project by Grant Number 1R21HD109490 from the National Institutes of Health, National Institute of Child Health & Human Development. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health (https://www.nichd.nih.gov). No industry partnerships collaborated on or funded this work.”

Please state what role the funders took in the study.  If the funders had no role, please state: "The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript."

If this statement is not correct you must amend it as needed.

Please include this amended Role of Funder statement in your cover letter; we will change the online submission form on your behalf.

3. Thank you for stating the following in the Competing Interests section:

“I have read the journal's policy and the authors of this manuscript have the following

commpeting interests:

BAM and PPV have intellectual property filings for each analysis algorithm in the

analysis method used in this manuscript.

BAM and PPV are involved with Cordian Technologies, a start-up founded by PPV,

which licenses the technologies used in this work.

YHL receives partial salary support from NHLBI (R21-HL156045-01).”

Please confirm that this does not alter your adherence to all PLOS ONE policies on sharing data and materials, by including the following statement: "This does not alter our adherence to  PLOS ONE policies on sharing data and materials.” (as detailed online in our guide for authors http://journals.plos.org/plosone/s/competing-interests).  If there are restrictions on sharing of data and/or materials, please state these. Please note that we cannot proceed with consideration of your article until this information has been declared.

Please include your updated Competing Interests statement in your cover letter; we will change the online submission form on your behalf.

4. We note that you have indicated that data from this study are available upon request. PLOS only allows data to be available upon request if there are legal or ethical restrictions on sharing data publicly. For more information on unacceptable data access restrictions, please see http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions.

In your revised cover letter, please address the following prompts:

a) If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially sensitive information, data are owned by a third-party organization, etc.) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent.

b) If there are no restrictions, please upload the minimal anonymized data set necessary to replicate your study findings as either Supporting Information files or to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories.

We will update your Data Availability statement on your behalf to reflect the information you provide.

5. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information.

Additional Editor Comments:

Please reply to all the reviewers' concerns

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

**********

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

**********

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: No

**********

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

**********

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: 1. Were the echo and CMR imaging all done at one institution, or were there patients from both centers?

2. Inclusion criteria are subjects with “diagnostic-level echo visualization of the RV,” then there are patients later excluded for poor color Doppler alignment. Can you expand on what is needed for color Doppler alignment for adequate analysis with DoVeR? In general, how challenging is it to obtain adequate echo imaging of the RV for DoVeR. I can see this being especially difficult in the adult congenital population where it also may be most useful.

3. What was the reason for MRI on the cohort of normal patients?

4. The text states for Figure 1 (d) as energy loss, and (e) as kinetic energy, whereas the figure states the opposite. Please clarify.

5. Please expand how the 4D flow measurements are projected onto 2D space? Is this for visualization similar to a “maximal intensity projection (MIP)” would be for an angiogram? Is this for visualization only, or for quantification as well? Do the 4D flow measurements account for all of 3D space?

6. I understand that the small numbers of this study make this challenging, though can you discuss differences in the agreement of parameters between DoVeR and 4D flow in the different patient groups. Is there generally more agreement in normal patients vs rTOF patients as DoVeR is missing the RVOT which is captured in 4D flow?

7. Would there be utility in repeating this analysis in other echocardiographic planes to capture RV outflow and pulmonary regurgitation?

Reviewer #2: In this article, the authors aimed to compare the efficacy of echo DoVeR method with 4D flow MRI in quantifying intracardiac flow fields of the RV in some patients with congenital heart disease and controls. In general, the manuscript is well-structured and provides a clear context for your study. I have a few comments/suggestions:

Methods section:

1) Pg. 4, Line 74: The patient recruitment phase concluded in October 2020, extending beyond three years. Were there any additional patient enrolments during this period, and could you provide details regarding the study's timetable throughout? Additionally, given the retrospective nature of the study, it would be beneficial to specify the commencement date for the analysis of echo and MRI images. Clarifying this information will enhance the transparency of the study timeline.

2) Pg 4, Line 77: You enlisted three patients with right ventricular dysfunction (RVD) stemming from "atrial-level shunting." It would be helpful to clarify whether this atrial-level shunting exclusively involved atrial septal defects (ASD) in these patients or if other congenital heart diseases, such as partial anomalous pulmonary venous drainage, were also present. If the RVD was solely attributed to ASD, it might be more precise to indicate RVD in patients with ASD, avoiding the term "atrial-level shunting" to prevent confusion among readers. However, if other pathologies were involved in these three patients, please specify the nature of these conditions.

3) Pg 5, Line 83: “Echocardiogram Acquisition”. Provide a bit more detail on the echo imaging process. For example, mention the echo machine settings used, measures used to improve the temporal resolution and colour Doppler of your images, or any specific protocols followed during acquisition.

4) Pg 5, Line 85: “A routine A4C view of the RV”. I guess you mean A4C focused RV view to better visualize the free RV wall.

5) Pg 6, Line 109: It's mentioned that a single DoVeR reconstruction takes approximately 7 minutes. While this information is useful, you may want to discuss the overall time required for the entire analysis process for each patient, including any preprocessing steps.

6) Pg 6, Line 114: “4D flow post-processing”. You mentioned that the velocity encoding was set between 2 m/s and 2.5 m/s during acquisition. Did you need VENC correction for any of your patients during processing?

Results section:

1) Pg. 9, Line 161: What is meant be poor CMR alignment? Please clarify.

Discussion section:

Discussion of the study's limitations is crucial. Firstly, the limited size of the cohort, with only 13 patients compared to 7 controls, raises concerns. To ensure the robust validation of the echo DoVeR against 4D MRI, a larger sample size is recommended. Secondly, the utilization of single plane 2D echocardiography for reconstructing flow in the complex 3D geometry of the RV is another limitation. Consideration of future endeavours involving coloured 3D echocardiography of the RV, coupled with your semi-automated MATLAB algorithms, could enhance the study. This approach has the potential to reconstruct a 3D colour Doppler velocity, providing a more comprehensive three-dimensional dataset that may better align with data obtained from 4D MRI.

Table 1:

1) I believe that RV measurements (EDVi, ESVi, EF, and PR%) are all obtained from CMR not echocardiography. This should be stated.

2) Is there a particular rationale behind not assessing the QP/QS ratio in patients with rTOF? Some of these patients may have residual shunts across the VSD patch. Even with the presence of severe PR, it's possible to quantify the QP/QS ratio in these individuals using CMR. Could you provide clarification on this matter?

Figures:

1) The quality of the figures is suboptimal and requires enhancement.

Reviewer #3: The authors compared a novel technique for estimating intracardiac flow dynamics from echocardiography against the more established but not widely available 4d flow MRI. The technique and the results are interesting. I have no major comments on the used methodology.

Minor comments:

1- Line 116: used to segment…

2- Line 190: define acronym on first use (CFI)

3- Figure 1: please indicate where the time series is being measured. Is it the mean time series of the whole RV area or taken from a specific point/region?

4- Figure: likewise done with a healthy control in Figure 1, it would be interesting to show the time series from a representative CHD patient with low RV function. Or maybe add the time series to the slices shown in Figure 3.

5-

Results section: consider moving any interpretations of the results to the discussion, e.g. line 227-228.

6-

The values in Table S1 are of great interest. Consider moving these to the main manuscript body and cite the table in the text.

7-

Discuss the limitation of small study participants (especially after excluding 8 cases due to failed reconstruction). Also discuss factors of reconstruction failure as a limitation of the technique.

**********

6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Reviewer #2: Yes: Mahmoud Shaaban, MD, PhD, FEACVI, FSCMR

Reviewer #3: No

**********

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Revision 1

Specific reviewer responses have been provided in an attached document. Additional edits from the editor have been addressed in the updated cover letter.

Attachments
Attachment
Submitted filename: Response for Reviewers.docx
Decision Letter - Hany Mahmoud Abo-Haded, Editor

Enhanced echocardiographic assessment of intracardiac flow in congenital heart disease

PONE-D-23-30513R1

Dear Dr. Vlachos,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at http://www.editorialmanager.com/pone/ and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Hany Mahmoud Abo-Haded, MD

Academic Editor

PLOS ONE

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #2: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: (No Response)

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: (No Response)

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: (No Response)

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: (No Response)

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: (No Response)

Reviewer #2: (No Response)

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: Yes: Jason Mandell

Reviewer #2: Yes: Mahmoud Shaaban, MD, PhD, FEACVI, FSCMR

**********

Formally Accepted
Acceptance Letter - Hany Mahmoud Abo-Haded, Editor

PONE-D-23-30513R1

PLOS ONE

Dear Dr. Vlachos,

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team.

At this stage, our production department will prepare your paper for publication. This includes ensuring the following:

* All references, tables, and figures are properly cited

* All relevant supporting information is included in the manuscript submission,

* There are no issues that prevent the paper from being properly typeset

If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps.

Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

If we can help with anything else, please email us at customercare@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Professor Hany Mahmoud Abo-Haded

Academic Editor

PLOS ONE

Open letter on the publication of peer review reports

PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.

We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.

Learn more at ASAPbio .