Peer Review History
| Original SubmissionSeptember 11, 2023 |
|---|
|
PONE-D-23-29027What predicts response to antidepressants for people with depression in primary care? An analysis of moderators in the PANDA trialPLOS ONE Dear Dr. Archer, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jan 13 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Dickens Akena, Ph.D Academic Editor PLOS ONE Journal requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Note from Emily Chenette, Editor in Chief of PLOS ONE, and Iain Hrynaszkiewicz, Director of Open Research Solutions at PLOS: Did you know that depositing data in a repository is associated with up to a 25% citation advantage (https://doi.org/10.1371/journal.pone.0230416)? If you’ve not already done so, consider depositing your raw data in a repository to ensure your work is read, appreciated and cited by the largest possible audience. You’ll also earn an Accessible Data icon on your published paper if you deposit your data in any participating repository (https://plos.org/open-science/open-data/#accessible-data). 3. We note that the grant information you provided in the ‘Funding Information’ and ‘Financial Disclosure’ sections do not match. When you resubmit, please ensure that you provide the correct grant numbers for the awards you received for your study in the ‘Funding Information’ section. 4. We note that you have indicated that data from this study are available upon request. PLOS only allows data to be available upon request if there are legal or ethical restrictions on sharing data publicly. For information on unacceptable data access restrictions, please see http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. In your revised cover letter, please address the following prompts: a) If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially identifying or sensitive patient information) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent. b) If there are no restrictions, please upload the minimal anonymized data set necessary to replicate your study findings as either Supporting Information files or to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. Please see http://www.bmj.com/content/340/bmj.c181.long for guidelines on how to de-identify and prepare clinical data for publication. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. We will update your Data Availability statement on your behalf to reflect the information you provide. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Partly Reviewer #3: Yes Reviewer #4: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: I Don't Know Reviewer #2: I Don't Know Reviewer #3: I Don't Know Reviewer #4: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes Reviewer #4: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: No Reviewer #3: Yes Reviewer #4: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Important note: This review pertains only to ‘statistical aspects’ of the study and so ‘clinical aspects’ [like medical importance, relevance of the study, ‘clinical significance and implication(s)’ of the whole study, etc.] are to be evaluated [should be assessed] separately/independently. Further please note that any ‘statistical review’ is generally done under the assumption that (such) study specific methodological [as well as execution] issues are perfectly taken care of by the investigator(s). This review is not an exception to that and so does not cover clinical aspects {however, seldom comments are made only if those issues are intimately / scientifically related & intermingle with ‘statistical aspects’ of the study}. Agreed that ‘statistical methods’ are used as just tools here, however, they are vital part of methodology [and so should be given due importance]. I look at the manuscript in/with statistical view point, other reviewer(s) look(s) at it with different angle so that in totality the review is very comprehensive. However, there should be efforts from authors side to improve (may be by taking clues from reviewer’s comments). Therefore, please do not limit the revision only (with respect) to comments made here. COMMENTS: There are a few serious issues about which I have different opinion and such observations/concerns are given below: Firstly, the ‘Title’ may mention that it is a secondary data analysis [nothing wrong in secondary data analysis, only it should be clear to potential readers, I guess]. This is (anyway) mentioned later on page 5 [We conducted secondary data analyses of PANDA trial [17] data to examine potential moderators of response to antidepressant treatment] anyway. Secondly, one very basic/fundamental question: In the back drop of the fact that the original trial article [Lewis G, Duffy L, Ades A, Amos R, Araya R, Brabyn S, et al. The clinical effectiveness of sertraline in primary care and the role of depression severity and duration (PANDA): a pragmatic, double-blind, placebo-controlled randomised trial. The Lancet Psychiatry. 2019;6(11)] clearly concludes “the main benefits in the first 6 weeks of treatment with sertraline are on reduction of anxiety symptoms, such as worry and restlessness, rather than an improvement in depressive symptoms” and also says that “Our finding that sertraline was not effective for depressive symptoms at 6 weeks is inconsistent with previous studies”, I wonder if this database is expected to through light on problem/question in hand [“What predicts response to antidepressants for people with depression in primary care?”] for the very purpose of this small ‘paper exercise’ [[i.e., no design or execution or data collection]? In ‘Strengths and limitations’ section, though it is stated that “the PANDA trial was not designed to detect moderators of treatment effect and therefore is likely to be underpowered to estimate interaction effects robustly. Thus, the results of the present study should be interpreted with caution” however, one can not do away just by stating/adding such cautionary note, in my opinion. Next, refer to ‘Methods-Outcome’ section where it is stated that “primary outcome for PANDA was the total score at 6 weeks on the Patient Health Questionnaire-9 (PHQ-9) and to maximise power this was treated as a continuous variable” which is totally “DISAGREED” because it is very erroneous. This is not the correct way to maximise/increasing/enhancing the power. Statement (on face value) that ‘treating any non-continuous variable as a continuous variable maximises (increase) the power’ is not only surprising but [such an erroneous statement] is not expected from present learned authors’ team. If you have something else in mind, please clarify. This is my first-hand {natural & immediate} reaction on the statement as it appears [& as I have understood it]. Please remember that this is a scientific/academic document and so all details should be clearly/correctly communicated (do not take readers’ for granted). In next section [Potential moderators] you said “In many cases the potential moderators were for the purposes of clarity of interpretation and presentation considered as categories; however, to maximise power many of the quantitative(?) measures were also analysed as continuous variables.” Is that correct? Surprising/wonderful. Mind you that the PHQ‐9 (used here, though correctly, as a brief depression severity measure) is likely to yield data that are in ‘ordinal’ level of measurement [and not in ratio level of measurement for sure {as the score two times higher does not indicate presence of that parameter/phenomenon as double}]. Then application of suitable non-parametric (or distribution free) test(s) is/are indicated/advisable [even if distribution may be ‘Gaussian’ (also called ‘normal’)]. May check (level of measurement) for other scores (example: CIS-R depression severity score, social support score). There is clear mention about ‘allocation’ {that Patients were randomly assigned (1:1) with a remote computer-generated code to sertraline or placebo, and were stratified by severity, duration, and site with random block length} in original trial article, but in present article (expected as this is an independent article and not one in series) there no such indication. More discussion on ‘sample size’ is also expected. Only saying that “The use of data from the PANDA trial enabled analysis of a sample size of 550 patients, which is larger than many other similar studies” is not at all sufficient, in my opinion. As pointed out in ‘important note’ above “This review pertains only to ‘statistical aspects’ of the study and so ‘clinical aspects’ should be assessed separately/independently [one should carefully consider/look at the clinical implications of the study]. In my opinion, to make this article acceptable (which is quite possible and easy), a small amount of re-vision (re-drafting) may be needed. The respected ‘Editor’ may consider accepting/further processing as otherwise the draft is nicely worded. ‘Major revision’ is recommended, assuming that the respected editor would like to give chance to authors for improvement of the manuscript. Reviewer #2: 1. The quality of the work is lacking. Use of different fonts, unjustified work, no line numbers; all these make the work tedious to review and give feedback 2. The title and the entire paper indicates that the authors tested various antidepressants yet all they assessed was sertraline. This is very misleading. 3. In the background and abstract the authors make a statement that antidepressants are the first line treatment for depression which is not true. First line treatment for depression is psychotherapy. Antidepressants are first line for severe depression 4. The conclusion in both the abstract and the main document need to be phrased better. The conclusion drawn from this work is rather erroneous given that the team only assessed on antidepressant 5. Under the section of participants; lines 4 and 5 are confusing. what was the uncertainty about..the benefits of antidepressant or diagnosis of depression 6.The authors interchangeably use the terms depressive symptoms and depression yet they assessed for depressive symptoms not depression. 7. Was the exclusion criteria by self report or by assessment tools. this needs to be explained properly. 8. In the out comes, the authors now introduce measurements by PHQ-9 at 6 weeks instead of using the CIS-R used at baseline. And again later on in the statistical analysis they are comparing baseline and 6/52 PHQ-9 scores. there was no mention of using the PHQ-9 at baseline in the methods. what was the rationale for measures at 6 weeks why not 3 or 6 months 9. Page 8, what tool was used to measure social support. If none, how did you come up with the scores. 10. please include a section of data collection tools and study procedure in your methods section. 11. The entire paper but mostly the methods sections needs to be written better 12. In the results section, the authors indicate that the baseline characteristics were similar for the two groups yet no p-values are provided in table 1 to this effect 13. table 1, there is no need to add % in all the cells. simply put it as (%) in the top cell of each column 14. The randomization process needs to be explained better. who conducted it, was there blinding or not,etc Reviewer #3: The authors have conducted a secondary analysis on data from the PANDA trial to examine the potential mediators for response to antidepressant treatment. This is an important topic as knowledge of these mediators can help clinicians to make decisions on who would most likely benefit from antidepressant treatment. The paper is generally well presented. My first comment is about table 1 which presents the baseline characteristics of the participants in both arms. The authors report that there was no statistical difference in the baseline characteristics of the two arms. I want to believe that a statistical test was done for this. Can the findings of this test also be presented in table 1 for clarity? Table 1 has a footnote A where n=119 (for suicidal ideation). However, from the table the n for suicide ideation seems to be 535. Can you clarify on this or correct it? Secondly, in the discussion section where the authors are comparing their findings with findings from other studies, they report that those aged 18-35 had greater treatment derived benefit than those aged 55-74 and that that individuals with higher levels of suicidal ideation derived less treatment benefit. However, these findings are not mentioned anywhere in the results. It leaves the readers wondering where these results came from. You may want to include them in your results section (text or tables). Reviewer #4: GENERAL: An important area of work to provide for precision medicine, with patient centered medical care for mental wellness. SPECIFIC: 1. The background attemtps to set the scene and this is good. Still, it is based on evidence synthesis and single studies. This creates confusion especially the flow from single studies, to a meta-analysis to single studies again. It would be key that the progonstic factors come from syntheses only. So that the authors could provide a synthesis of the recent studies done after the meta-analysis. 2.Ethical considerations: Was the observational study of the PANDA trial approved by the ethical committees? Or was this covered in the initial approval? 3.Table 1: Suggests randomization did not achieve a balance for those who were categorised as married, 36% vs 42%, intervention vs placebo. How did this affect the adjusted analysis? 4.The description of weak evidence for interaction based on the p-value may not be appropriate. The p-value is <0.05 (<0.29) cut off suggests that the relationship between the exposure/interactor and outcome is statisticaly significant. The authors acknolwegde that the PANDA trial "...was not designed to detect moderators of treatment effect and therefore is likely to be underpowered to estimate interaction effects robustly..." which may explain the "...weak evidence..." that could better be described in form of statistical significance. 5. It would be desireable to present the findings mostly in systematc reviews rather than single studies. Could the authors check for systematic reviews about the same and place their findings in this eveidence base? 6. The authors should consider summing the eunanswered research questions under "research implications". In this regard, are there any implications for relevant policy guidelines? ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No Reviewer #4: Yes: Ekwaro A OBUKU ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
|
| Revision 1 |
|
What predicts response to sertraline for people with depression in primary care? A secondary data analysis of moderators in the PANDA trial PONE-D-23-29027R1 Dear Dr. Archer We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Dickens Akena, Ph.D Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
|
PONE-D-23-29027R1 PLOS ONE Dear Dr. Archer, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Dickens Akena Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .