Peer Review History
| Original SubmissionOctober 26, 2023 |
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PONE-D-23-34616Characteristics and clinical outcomes of patients with kidney failure of unknown aetiology from ANZDATA registryPLOS ONE Dear Dr. Mallett, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jan 10 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Kind regards, Mohamed E Elrggal Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Thank you for stating the following in the Competing Interests section: "I have read the journal's policy and the authors of this manuscript have the following competing interests: "M.S.Y.N. has received research grants and travel sponsorships from Avant Foundation and postdoctoral research fellowship from Royal Brisbane and Women’s Hospital Foundation." 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Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Reviewers comments Characteristics and clinical outcomes of patients with kidney failure of unknown etiology from ANZDATA registry General comment 1. Well done to the authors for submitting this paper for possible publication 2. It will helpful to come up clearly with the definition of uESKD. It should have a diagnostic criteria clearly similar to literature and other studies authors hope to compare their study to. 3. Most sentences need a senior author to read through to conform to manuscript standards 4. CKDu is a fairly new area or study but there has been a lot of work with clear definitions I was hoping authors will explore 5. Sentences should not be started with roman numerals Specific comments Abstract 1. What is eESKD exactly. In terms of definition? 2. Law of first mention for uESKD and how was it defined? 3. ‘Dependent on the region, 16% of chronic kidney disease’…. Authors should state exactly the region they quoted. 4. Smoking cannot be considered as a cause of CKD and hence should stay as a risk factor. Material and methods 5. Was wondering why the data set ends in 2021. Could the authors add on up to at least 2022? 6. It might be helpful to define clearly all terms used in the study here. Results 7. I suggest autors do not start sentences with numbers in manuscript 8. “Age 40-59 years old, BMI 25-29.9, peritoneal dialysis as first KRT modality and more recent KRT..”Most sentences can be well written as academic writing to make it easier to read. Like the example above. Many such in the write up 9. ‘…current smoking status and presence of comorbidities were associated with reduced likelihood of kidney transplant. Did authors assess the likelihood ratio? Discussion 10. which is lower than rates in United Kingdom (14.9%) [7], Europe (17.0%) [8], Brazil (24%) [9] and Mexico (54%) [10]. It will be helpful to discuss why Mexico had such high prevalence or what makes the studies different from the UK, Europe and Brazil. 11. “People with uESKD on dialysis had increased mortality risk compared to people with non-uESKD. On subgroup analysis, uESKD had increased mortality risk compared to diabetic nephropathy, glomerular disease and ADPKD; but similar mortality risk compared to other kidney diseases.” It might be helpful to avoid long sentences of the results in the discussion. 12. Chronic kidney disease of uncertain aetiology (CKDu) observed in low and middle income countries mainly occurs in agricultural communities affecting young males [13]. It is fundamentally helpful to know the clear definition of uESKD in the registry. Did it meet a clear diagnostic criteria or just physician clinical judgement? Very difficult to compare to others with clear definition. …and are not always biopsy- or genetically-proven.” What proportions were biopsy proven then?” Will the findings be different with biopsy proven diagnosis? 13. Further study is required to elucidate the potential genetic, occupational, and environmental factors causing uESKD in Australia. Are there no reports at all or studies in New Zealand or Australia on the subject? 14. “Shortcomings included the use of retrospective observational data…”. I suggest limitation to the study might be a preferred term. Conclusion 15. ‘People with uESKD on KRT had increased mortality risks compared to non-uESKD. uESKD has similar progression to kidney transplantation compared to uESKD’. Not clear in my mind the clear importance of this descriptive studies? what hypothesis or research question are authors seeking to generate or hoping to answer? Reviewer #2: The manuscript entitled (Characteristics and clinical outcomes of patients with kidney failure of unknown aetiology from ANZDATA registry) discusses a quite important issue and highlights the prevalence and outcomes of ESRD of unknown etiology and these are my comments: 1- Abstract: correct the typo in (eESKD) in the 4th line of the introduction. 2- Materials and Methods, Statistical analysis: a) You mentioned that baseline variables were summarised using counts and percentages and assessed by χ2 tests of independence (Table 1 and 2). In these tables, there are a lot of significant associations, so you need to perform the Bonferroni correction for a chi-square analysis for multiple comparisons. b) In Table S2, there are some continuous variables (for example; dialysis vintage) you should mention the statistical test used. 3- Please mention what was the basis of the classification of causes of ESKD and why hypertension was not considered in your classifications. 4- Other causes of ESKD constituted a large number of your cohort. They were approximately one-third of the dialysis cohort. Please identify these causes and the percentage of each cause. 5- do you have actual numbers for cases with definite diagnosis by renal biopsy or genetic testing? 6- In my opinion, the term ''progression'' to kidney transplant is not proper and it may be better to change it to receiving kidney transplant. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-23-34616R1Characteristics and clinical outcomes of patients with kidney failure of unknown aetiology from ANZDATA registryPLOS ONE Dear Dr. Mallett, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== Thank you for response to our reviewers' comments. Still, some minor adjustments need to be made before final acceptance. Please address the reviewers' comments and send the manuscript back. ============================== Please submit your revised manuscript by Apr 04 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Mohamed E Elrggal Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Thank you for the responses and congratulations to the authors. Most comments have been well addressed. I have no further comments for the authors Reviewer #2: Thanks to the authors for the corrections and modifications that were made. I have few additional comments. 1- You classified them as uESKD and non-uESKD. In my opinion, it would sound better to replace non-uESKD with known ESKD. 2- In the results, you stated that the median follow-up time for the dialysis was 3 years. This indicates that at least 50% of the patients were followed for only 3 years. Then you mentioned that the mortality rate for people on dialysis at 5 years was 53.1%. I think these numbers need to be revised. 3- In conclusion; uESKD has similar likelihood of kidney transplantation compared to uESKD. Please revise and correct this sentence. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Dr. Elliot Koranteng Tannor Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Characteristics and clinical outcomes of patients with kidney failure of unknown aetiology from ANZDATA registry PONE-D-23-34616R2 Dear Dr. Mallett, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Mohamed E Elrggal Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-23-34616R2 PLOS ONE Dear Dr. Mallett, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Mohamed E Elrggal Academic Editor PLOS ONE |
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