Peer Review History
| Original SubmissionFebruary 15, 2024 |
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PONE-D-24-05510High Red Blood Cell Distribution Width Attenuates the Effectiveness of Immune Checkpoint Inhibitor Therapy: An Exploratory Study Using a Clinical Data WarehousePLOS ONE Dear Dr. Kobayashi, Thank you for submitting this manuscript to PLOS ONE. I apologize that its review took some time. Two referees have now commented on the manuscript. They have asked for some clarifications and provided some suggestions. I hope you and other co-authors will be able to address all of them with minor revisions of the manuscript or through rebuttals in a response-to-review document. Please submit your revised manuscript by Jul 24 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. In the online submission form, you indicated that "Data cannot be shared publicly due to ethical considerations. The data underlying the results presented in this study are available from the Yokohama University Ethics Committee. Interested researchers who meet the criteria for access to confidential data can request the data by contacting the corresponding author." All PLOS journals now require all data underlying the findings described in their manuscript to be freely available to other researchers, either 1. In a public repository, 2. Within the manuscript itself, or 3. Uploaded as supplementary information. This policy applies to all data except where public deposition would breach compliance with the protocol approved by your research ethics board. If your data cannot be made publicly available for ethical or legal reasons (e.g., public availability would compromise patient privacy), please explain your reasons on resubmission and your exemption request will be escalated for approval. 3. Your ethics statement should only appear in the Methods section of your manuscript. If your ethics statement is written in any section besides the Methods, please move it to the Methods section and delete it from any other section. Please ensure that your ethics statement is included in your manuscript, as the ethics statement entered into the online submission form will not be published alongside your manuscript. 4. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: I find the manuscript to be very interesting. The search for prognostic biomarkers related to ICI treatment outcomes is now a highly debated topic, especially with the aim of identifying those patients who may not benefit. In this perspective, the work appears to be well-structured, certainly deserving of publication. I found the statistical analyses performed to be comprehensive. They indicate that RDW could play a prognostic role in predicting shorter ICI therapy duration and PFS. I would like to make some notes: some are of a purely grammatical nature, and others are more significant regarding the statistical analyses. - Line 4, Short title: I think it is better to use effectiveness than efficacy. - Line 31-33, Abstract, Background: It should sound better as "This study utilizes a Clinical Data Warehouse (CDW) to explore the prognostic significance of novel blood-based factors, such as the neutrophil-to-lymphocyte ratio and red cell distribution width (RDW), to enhance the prediction of ICI therapy benefit." - Line 36, Methods: It misses the extended form of "NSCLC" and "EMR". - Abstract, Methods: You should mention ROC curve analysis. - Abstract, Results: You should mention the total number of patients or the number of patients in each cohort. - Line 51, Abstract, Conclusions: It is better to use "suggests" than "affirms" - Line 52, Abstract, Conclusions: It is better to use "initiation" than "commencement" - Line 61, Introduction: Remove "EGFR". - Line 63, Introduction: ".....prognostically significant." Here, it misses the citation. - Line 69, Introduction: Remove "rate". - Line 76, Introduction: You should substitute "predicitve" with "prognostic". These terms have different meanings. - Line 78, Introduction: You can cite "Maffezzoli M, Santoni M, Mazzaschi G, et al. External validation of a red cell-based blood prognostic score in patients with metastatic renal cell carcinoma treated with first-line immunotherapy combinations. Clin Exp Metastasis. 2024;41(2):117-129. doi:10.1007/s10585-024-10266-6." - Line 92, Introduction: it is better to use effectiveness than efficacy. - Line 95, Introduction: You should substitute "predicitve" with "prognostic". - Line 139, Methods: Introduce "NSCLC" as abbreviation (then use it in the other parts of the manuscript). - Line 150, Statistical Analysis: Better to use "fewer times" than "less" - Statistical Analysis: the statistical plan of the study is solid and appropriate. The dual validation approach, logistic regression, ROC curve and correlation analyses, as well as the use of CDW, enhance the robustness and generalizability of the findings. However, there are several areas where the methodology could be strengthened: 1) I think that incorporating time-to-event analysis (Cox proportional hazards models) could provide additional insights about the biomarkers and their association with PFS. 2) I think that exploring additional novel biomarkers or combining multiple markers into a composite score might improve predictive accuracy. - Table 1: Please, clarify whether the age values are reported as median or mean, and explain ranges in brackets. - Line 181, Exploration Part: Please, specify that there's no differences in the DISTRIBUTION of age, gender, etc. between the two groups. - Line 195: blood urea nitrogen (BUN). - Line 196: Chlorine (Cl) - Line 203: the reasons for selecting specific variables for the multivariate model should be clearly justified. - Line 206: The multivariate logistic regression includes multiple predictors, but only RDW remained significant. It might be beneficial to explore interactions between variables and other potential confounders. Line 208: Please, justify the selection of the RDW threshold (15.5) with more detail (how this cutoff was chosen and its clinical relevance). - Line 246: You should substitute "predicitve" with "prognostic". - Validation part 2: It might be beneficial to explore interactions between variables and other potential confounders. - Line 301: use "NSCLC". - Line 318: You can cite "Maffezzoli M, Santoni M, Mazzaschi G, et al. External validation of a red cell-based blood prognostic score in patients with metastatic renal cell carcinoma treated with first-line immunotherapy combinations. Clin Exp Metastasis. 2024;41(2):117-129. doi:10.1007/s10585-024-10266-6." - Discussion: External validation using data from different institutions or a prospective cohort would strengthen the findings' generalizability. Reviewer #2: The manuscript by Kobayashi et al. is an interesting study that leverages an often-overlooked source of data collection: the Clinical Data Warehouse (CDW). This approach is commendable as it opens new avenues for discovering prognostic biomarkers in cancer treatment, an area where current markers exhibit limited predictive accuracy. The strength of the study lies in the rigorous validation process utilizing two different cohorts to ensure the reliability of the exploratory analysis. By confirming findings in both the CDW and EMR cohorts, the study supports the identification of elevated red cell distribution width (RDW) as a potential for predicting the efficacy of immune checkpoint inhibitor (ICI) therapy and paves the way for future studies on the topic. I recommend this article for publication with a few modifications, as outlined in the following suggestions. • Abstract o Line 36: Expand EMR when using for the first time. o Line 36: Expand NSCLC when using for the first time. o Clarify the methodology in the abstract: Were there two cohorts? Was the study only done on NSCLC patients? Mention the number of patients in each cohort (n=__). Line 41: "... utilized CDW for discovery and EMR/CDW for validating prognostic biomarkers for ICI treatment using the number of doses of ICI as a proxy." Or restructure the abstract to make it clear that the question is about finding biomarkers to predict ICI response, with an intermediate step being finding a PFS proxy. • Introduction o Line 63: Provide a citation for immune-related adverse events. Explain the tail effect and early non-response. o Line 71: Clarify "various measurement methods"—are they non-standardized? Do they give different results? • Methodology o State why the authors selected only lung cancer patients for the validation cohorts. o Explain how the authors selected the number of doses for early-discontinuation and sustained-treatment. o Mention the statistical test used for group comparisons in the text as well as in the table captions. • Results o Mention the criteria used to select variables for the multivariable regression (Line 203). o State if RDW was directly compared with PFS, not just the number of pembrolizumab doses, in the first validation cohort. Include additional data if there is an association, as it would strengthen the notion that the number of doses is a good surrogate for PFS. o Compare patient characteristics of the exploratory cohort and the validation cohorts and identify any possible group differences. Add this in the supplementary materials. o Table 6: Perform a subgroup comparison for nivolumab, pembrolizumab, and atezolizumab (n%) between the early-discontinuation group and the sustained-treatment group instead of using an overall p-value. • Discussion o It is interesting and logical that the number of pembrolizumab doses correlates with progression-free survival. Has any other study reported using the number of doses as a PFS proxy? o Line 329: Clarify that there is a weak negative correlation between RDW and actual PFS. In the results, it is stated as between RDW and the number of pembrolizumab doses. • The authors should revise the language to improve readability. Here are a couple of examples: o Line 37: Use "between" instead of "from." o Use active voice wherever possible. Split sentences into two instead of using long sentences (Line 60-63). o Line 300: Remove "the three ICIs." ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. 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| Revision 1 |
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High Red Blood Cell Distribution Width Attenuates the Effectiveness of Immune Checkpoint Inhibitor Therapy: An Exploratory Study Using a Clinical Data Warehouse PONE-D-24-05510R1 Dear Dr. Kobayashi, We received the revised version of this manuscript. I have examined it and the accompanying response to review letter. The revision appropriately addresses all concerns that were raised by the reviewers. I am therefore pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. The journal does not perform copy editing, so the publication will be entirely based on the revised manuscript. I recommend that you and your colleagues take a final look to correct any language-related or other error that may have gone unnoticed. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Santosh K. Patnaik, MD, PhD Academic Editor PLOS ONE |
| Formally Accepted |
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PONE-D-24-05510R1 PLOS ONE Dear Dr. Kobayashi, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Santosh K. Patnaik Academic Editor PLOS ONE |
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