Peer Review History
Original SubmissionApril 4, 2023 |
---|
PONE-D-23-09587Brain connectivity changes underlying depression and fatigue in relapsing-remitting multiple sclerosis: a systematic reviewPLOS ONE Dear Dr. Kampaite, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Aug 28 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Francesca Benuzzi, Ph.D. Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. We note that the grant information you provided in the ‘Funding Information’ and ‘Financial Disclosure’ sections do not match. When you resubmit, please ensure that you provide the correct grant numbers for the awards you received for your study in the ‘Funding Information’ section. 3. We note that you have indicated that data from this study are available upon request. PLOS only allows data to be available upon request if there are legal or ethical restrictions on sharing data publicly. For more information on unacceptable data access restrictions, please see http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. In your revised cover letter, please address the following prompts: a) If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially sensitive information, data are owned by a third-party organization, etc.) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent. b) If there are no restrictions, please upload the minimal anonymized data set necessary to replicate your study findings as either Supporting Information files or to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. We will update your Data Availability statement on your behalf to reflect the information you provide. Additional Editor Comments : Dear Authors, both Reviewers found the review very interesting and particularly relevant to the filed. However, they found major issues to be addressed before the paper should be ready for publication. In particular, the most critical point is the rationale to include depression and fatigue and the relationship that occurs between the two. Another relevant point is the description of the methodology used to extract and code of data that need more clarification. I am confident that the points raised by Revierws may be addressed and resolved thus making the paper suitable for publication. Regards, [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: N/A Reviewer #2: N/A ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Please check the attached. The PRISMA approach clearly shows the search process. The brain network reviews for depression and fatigue were a strength of the paper. The limitations of the studies included in the paper serve as a valuable resource for researchers to identify research gaps, which is one of the key objectives of a literature review. It was a nice job! However, there are a few points that could be modified and added: 1) It is unclear why depression and fatigue were reviewed together and how they are related. The authors could have provided a rationale for why other MS cognitive symptoms were not included. 2) The sentence "This is supported the observation that depression is more prevalent in MS than in other neurodegenerative disorders" could be improved by providing a reference that compares MS to other neurodegenerative disorders in this regard. With this references, It is not proven that depression is more prevalent in MS than in ALS, for instance. 3) The authors utilized three top databases in their search for relevant literature; however, it should be noted that Google Scholar results are also a comprehensive resource when conducting a systematic review. (Please check this paper if it is eligible to be included , found from first page of search on Google scholar with the inclusion and exclusion criteria.) • Carotenuto, A., Valsasina, P., Preziosa, P., Mistri, D., Filippi, M., & Rocca, M. A. (2023). Monoaminergic network abnormalities: a marker for multiple sclerosis-related fatigue and depression. Journal of Neurology, Neurosurgery & Psychiatry, 94(2), 94-101. 4) The research questions are not stated in the methodology section. The authors should perfectly illustrate the aim of the study. 5) The use of "PwRRMS" as a short form is not common and could be confusing in the paper. 6) Table 1 does not need to be in the main text and could be summarized in a few lines. 7) In Table 4, the "Brain Region" column does not necessarily represent the region. For example, in cells 1-3 I, it shows the condition rather than regions. 8) The authors presented the overlapping of depression and fatigue in the papers included in the review using three long tables. It would be helpful for the readers to better understand the relationship between depression and fatigue in MS patients and to identify potential research gaps. In the text, it would be beneficial to provide a brief explanation of why it is important to study the co-occurrence of these symptoms. 9) The authors discussed brain networks perfectly and in a well-structured manner. The same could be done for disease progression regarding depression and fatigue in MS patients. Reviewer #2: Kampaite and colleagues propose an interesting review aiming to elucidate the relationship between depression and fatigue and brain connectivity in patients with relapsing-remitting Multiple Sclerosis (MS). Their searches were conducted using three databases (PubMed, Web-of-Science and Scopus). Studies employing fatigue and depression assessments validated for MS and included brain structural, functional magnetic resonance imaging (fMRI) or diffusion MRI (dMRI) were included. After selection process, Sixty studies met the criteria: 18 diffusion MRI (dMRI) (15 fatigue, 5 depression) and 22 functional MRI (fMRI) (20 fatigue, 5 depression) studies were included. They found a heterogeneous literature since half of studies reported no correlation between brain connectivity measures and fatigue or depression. Positive findings showed that abnormal cortico-limbic structural and functional connectivity was associated with depression. Fatigue was linked to connectivity measures in cortico-thalamic-basal- ganglial networks. Additionally, both depression and fatigue were related to altered cingulum structural connectivity, and functional connectivity involving thalamus, cerebellum, frontal lobe, precentral and postcentral gyri. Qualitative analysis suggests neuropathological effects, possibly due to axonal and/or myelin damage, in the cortico-thalamic-basal-ganglial and cortico-limbic network may underlie fatigue and depression in patients with MS, respectively, but the overall results were inconclusive. The review is relevant for MS research community and well conducted. However, some revisions may improve the quality and readability of the manuscript. Studies assessing the effects of disease modifying therapies were excluded. According to the PRISMA flowchart, seven studies were excluded due to this criterion. However, I wonder if a baseline evaluation could have been employed. Authors had to register their review proposal in PROSPERO that represents an online database created to provide a comprehensive listing of systematic reviews registered at inception to help scientific community to avoid duplication. Negative findings were reported by half of the studies included in the systematic review; did the authors try to qualitatively analyze in which way studies reporting negative findings were different from those that reported significant associations? Authors should better describe the methodology behind extraction and coding of data for descriptive purposes (Table and population characteristics) and outcome discussion. For example, how many authors participated in this phase? Did they work in blind mode? How did they reach an agreement about data to be entered in case of disagreement? I would suggest, where possible, to make sections/paragraphs more coincise in order to make the article more readable (e.g. it would be better to underpin converging/overlapping evidences more than describing/reporting the results of any single significant study - that are comprehensively reported/mentioned in the Tables) Other/Minor revisions: I would always mention the number of significant studies out of the total availbale studies with a specific MRI metric/methodology (e.g. 3 RS-FMRI studies found significant results out of 6 available RS-FMRI studies) rows 374-380: which is/are the considered MRI measure/s (atrophy, volume, CTh, WML load)? row 466-470: check the numbers (it seems that the sum of the reported numbers do not does 29) In Table 3 I would better specify the significant MRI measure (i.e. atrophy, CTH, diffusion measures, etc) Why TBSS measures were not considered? Why CTh and VBM atrophy patterns were not considered? ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Sara Hejazi Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
|
Revision 1 |
PONE-D-23-09587R1Brain connectivity changes underlying depression and fatigue in relapsing-remitting multiple sclerosis: a systematic reviewPLOS ONE Dear Dr. Kampaite, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Considering the important topic and potential impact of the manuscript I decided to let an additional reviewer to read the contribution, and based on that I decided that the manuscript needs a minor revision. Please submit your revised manuscript by Feb 17 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Peter Lundberg Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #3: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #3: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #3: N/A ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #3: No ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #3: (No Response) ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #3: Thank you for letting me be a referee for this interesting manuscript. It contains important information and I think it should be published. I also find that the previous reviewers have addressed important issues, and the authors have responded and revised their text accordingly. However, I miss important information on heat sensitivity and MS in the back ground - this is a typical feature of MS and is intertwined with fatigue in particular. The potential of heat sensitivity to increase fatigue as well as other core symptoms is generally overlooked Consequently, cryotherapy against fatigue should me mentioned more clearly, for exmaple in the introductory text on therapies used for fatigue. Suitable references by Flensner et al, especially https://doi-org.ezproxy.its.uu.se/10.1186/1471-2377-11-27 I also miss one paper on fMRI and fatigue that seems to fit with the inclusion criteria of the authors, i.e. dividing subtypes and reporting fatigue, available on Pubmed: Engstrom et al https://doi-org.ezproxy.its.uu.se/10.1002/brb3.181. This work is congruent with the works by Filippi, but also touches upon potential mechanisms of fatigue, which could be expanded a bit in the text. Finally you may add the first collection of articles before selection using your criteria, appendix or supplement. I will be happy to read a revised version. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #3: Yes: Anne-Marie Landtblom ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
Revision 2 |
Brain connectivity changes underlying depression and fatigue in relapsing-remitting multiple sclerosis: a systematic review PONE-D-23-09587R2 Dear Dr. Kampaite, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Peter Lundberg Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
Formally Accepted |
PONE-D-23-09587R2 PLOS ONE Dear Dr. Kampaite, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Professor Peter Lundberg Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .