Peer Review History
| Original SubmissionMarch 22, 2023 |
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PONE-D-23-08621Global transcriptional analysis of Geobacter sulfurreducensgsu1771 mutant biofilm grown on two different support structuresPLOS ONE Dear Dr. Juarez, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jul 22 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Thank you for stating the following financial disclosure: "KJ and AH-E received PAPIIT-UNAM (grant No IN212022). BJ-R received CONACYT-scholarship awarded during his master’s program GMH-M received CONACYT-postdoctoral fellowship (2322131) KJ received PASPA-UNAM for financial support during a sabbatical stay" Please state what role the funders took in the study. If the funders had no role, please state: "The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript." If this statement is not correct you must amend it as needed. Please include this amended Role of Funder statement in your cover letter; we will change the online submission form on your behalf. 5. Thank you for stating the following in the Acknowledgments Section of your manuscript: "This study was financially supported by PAPIIT-UNAM (grant No IN212022). We thank Leticia Olvera, Veronica Jacinto, Ricardo Grande, Andres Saralegui, and Shirley Ainsworth for their technical support. BJ-R thanks CONACYT for the scholarship awarded during his master’s program. GMH-M thanks CONACYT for the postdoctoral fellowship (2322131), KJ also thanks PASPA-UNAM for financial support during a sabbatical stay.." We note that you have provided funding information that is not currently declared in your Funding Statement. However, funding information should not appear in the Acknowledgments section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: "KJ and AH-E received PAPIIT-UNAM (grant No IN212022). BJ-R received CONACYT-scholarship awarded during his master’s program GMH-M received CONACYT-postdoctoral fellowship (2322131) KJ received PASPA-UNAM for financial support during a sabbatical stay" Please include your amended statements within your cover letter; we will change the online submission form on your behalf. 6. Thank you for stating the following in your Competing Interests section: "NO authors have competing interests" Please complete your Competing Interests on the online submission form to state any Competing Interests. If you have no competing interests, please state "The authors have declared that no competing interests exist.", as detailed online in our guide for authors at http://journals.plos.org/plosone/s/submit-now This information should be included in your cover letter; we will change the online submission form on your behalf. 7. 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In your cover letter, please note whether your blot/gel image data are in Supporting Information or posted at a public data repository, provide the repository URL if relevant, and provide specific details as to which raw blot/gel images, if any, are not available. Email us at plosone@plos.org if you have any questions. 9. Please amend either the title on the online submission form (via Edit Submission) or the title in the manuscript so that they are identical. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: N/A Reviewer #2: N/A ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The no of references should be reduced. The manuscript contains voluminous data , that often confuses the reader as the objectives of the work is not mentioned clearly in the Introduction. However the work is good and deserves publication after minor revision. Reviewer #2: Appears to be interesting paper following up on prior observations. The entire paper is based on transcriptional analysis but reviewer is unable to review without access to RNAseq data. NCBI DEO database data locked until 2025 without secure token. No data on depth, % that was rRNA, or quality of RNA read data. Also unable to accept without a supplementary table of --entire-- transcriptional data. Only selected data is provided about author-selected genes. This selection is based on a "Custom script" used for analysis, unable to verify or repeat analysis. Unable to use data for future work if only subset chosen by unrepeatable analysis. Please check Fig 5 -- if only a few microamps of current were produced from such large 65 cm^2 electrodes, the biofilms are barely alive and should not be used. It is very odd that the person who performed crucial experiements needed to produce the key data in this paper is not an author or part of any part of the analysis. If there is no author on this paper who understands the difference between good and bad growth on the electrode, it is suspect. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Global transcriptional analysis of Geobacter sulfurreducens gsu1771 mutant biofilm grown on two different support structures PONE-D-23-08621R1 Dear Dr. Juarez, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication (necessary suggestions/concerned raised by the reviewers are addressed) and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Moupriya Nag Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-23-08621R1 Global transcriptional analysis of Geobacter sulfurreducens gsu1771 mutant biofilm grown on two different support structures Dear Dr. Juarez: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Moupriya Nag Academic Editor PLOS ONE |
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