Peer Review History
| Original SubmissionOctober 29, 2023 |
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PONE-D-23-30991Age-related changes in the hematopoietic stem cell pool revealed the balance of symmetric and asymmetric divisionsPLOS ONE Dear Dr. Yamazaki, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jan 05 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Thank you for stating the following in your Competing Interests section: "none" Please complete your Competing Interests on the online submission form to state any Competing Interests. If you have no competing interests, please state "The authors have declared that no competing interests exist.", as detailed online in our guide for authors at http://journals.plos.org/plosone/s/submit-now This information should be included in your cover letter; we will change the online submission form on your behalf. 3. In your Data Availability statement, you have not specified where the minimal data set underlying the results described in your manuscript can be found. PLOS defines a study's minimal data set as the underlying data used to reach the conclusions drawn in the manuscript and any additional data required to replicate the reported study findings in their entirety. All PLOS journals require that the minimal data set be made fully available. For more information about our data policy, please see http://journals.plos.org/plosone/s/data-availability. "Upon re-submitting your revised manuscript, please upload your study’s minimal underlying data set as either Supporting Information files or to a stable, public repository and include the relevant URLs, DOIs, or accession numbers within your revised cover letter. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. Any potentially identifying patient information must be fully anonymized. Important: If there are ethical or legal restrictions to sharing your data publicly, please explain these restrictions in detail. 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Please see the following video for instructions on linking an ORCID iD to your Editorial Manager account: https://www.youtube.com/watch?v=_xcclfuvtxQ 5. Please amend the manuscript submission data (via Edit Submission) to include authors Dr. Shoya Iwanami, Dr. Munetomo Takahashi, Dr. Joydeep Bhadury, and Dr. Shingo Iwami. 6. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. 7. We notice that your supplementary [S1-S4 Figure] are included in the manuscript file. Please remove them and upload them with the file type 'Supporting Information'. Please ensure that each Supporting Information file has a legend listed in the manuscript after the references list. 8. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. Additional Editor Comments: As a phenotypic HSC "surrogate" , the population KSL CD201+CD150+ population has been used. Please discuss the possiblity of the "dissociation phenotype-function ex vivo". Also you may provide some arguments that the KSLCD201+CD150+ population can be considered as a bone fide approximation of the functional HSCs. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: I Don't Know ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: In the present paper, the authors developed mathematical models to analyze and describe HSC division types across aging in mouse. For this purpose, they used ex vivo data to define parameters linked to HSC division type and in vivo data to estimate parameters for cell differentiation dynamics. The authors showed through single cell assay and analysis of CD201+ CD150+ KSL proportion after ex vivo culture, an age-related change in HSC division type. Indeed they observed a high rate of symmetric self-renewal division in HSC coming from young mice, and progressive increase of asymmetric self-renewal and symmetric differentiation divisions with increase of mouse age. In vivo analysis of CD34- CD150+ KSL total number and frequency highlighted an age-related increase of this population, which was not associated to cell cycle rate modification nor apoptosis resistance. Mathematical modeling was subsequently performed and properly described age-related HSC and progenitors dynamics observed in vivo. Finally, the authors concluded that symmetric self-renewal divisions predominantly occurs in HSCs during animal’s lifespan. Age-related HSCs division mode is an intensive research area. The authors present very interesting data that are in contrast with several studies already published, where young HSCs were associated with asymmetric self-renewal and symmetric self-renewal was related to aged HSCs. The data presented in this article are convincing and well-argued and give food for thought on this crucial subject. I am favorable to the publication of this article with the minor revisions below : 1 – Results, lines 146/147 : the statement is associated with figure 4A but probably should be associated with figure 4B. 2 – Results, line 148 : description of the different parameters could be relied to Table 1. 3 – Results, line 149 : the expected HSC division distribution in presented in figure 4C, but is associated with figure 4B in the text. 4 – Discussion, line 198 : reference n°41 is not related to the statement line 196-197. 5 – Materials and methods, lines 270-276 : several chemicals are proposed to be tested in culture while text and figure1A show the selective use for PVA during the experiments. 6 - Materials and methods, lines 285-289 : antibodies used for HSC caracterization and their manufacturer’s origin could be detailed. 7 - Materials and methods, line 294 : the name of the post-hoc test is not specified. 8 – Figure 1B : upper pannel n°7 (from the right side) correspond to middle proportion of CD201+ CD150+ KSL, but is classified in high proportion of CD201+ CD150+ KSL 9 - Figure 1B : contrary to the figure 1B legend, no pannel for low CD201+ CD150+ KSL ratio (purple) is proposed. 10 – Figure 2A : I don’t understand why the sum of all frequencies for a graph is not closed to 100. Is the ordinate value represents number of wells instead of frequency ? 11 – Figure 2A : in the graph corresponding to mice aged of 6 weeks, the last bar (ratio 0,9-1) shows 5 parts while it is given for 4 mice in the legend. Is there 5 mice for this age? 12- Figure 3B and C : maybe the authors could precise in the legend that the right pannel represent the same data compared to left pannel, with log10 transformation of data. 13 – Figure S1B : there is no description in the legend for this part. 14 – Figure S5 : there is no legend provided for this figure, and it is not quoted in the text. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Age-related changes in the hematopoietic stem cell pool revealed via quantifying the balance of symmetric and asymmetric divisions PONE-D-23-30991R1 Dear Dr. Yamazaki, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Zoran Ivanovic, MD, PhD, HDR Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-23-30991R1 PLOS ONE Dear Dr. Yamazaki, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Zoran Ivanovic Academic Editor PLOS ONE |
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