Peer Review History
| Original SubmissionMay 21, 2022 |
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PONE-D-22-14779Prevalence and incidence of latent tuberculosis infection among healthcare workers in chest diseases hospitals, Bangladesh: putting infection control into contextPLOS ONE Dear Dr. Islam, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. All the comments raised by the Reviewers are relevant to improving this submission and I invited you to address them accordingly. The comments can be found at the end of this letter. Please submit your revised manuscript by 07/12/2022. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Desmond Kuupiel, PhD Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Thank you for stating the following in the Acknowledgments Section of your manuscript: “We would like to thank all the study participants for their time and respect. This research was funded by the United States Centers for Disease Control and Prevention (CDC), through the cooperative agreement grant number 5U01GH1207. icddr,b acknowledges with gratitude the commitment of CDC to its research efforts. icddr,b is also grateful to the Governments of Bangladesh, Canada, Sweden, and the UK for providing core/unrestricted support. We also acknowledge Arkray Healthcare Pvt Ltd for their support.” We note that you have provided additional information within the Acknowledgements Section that is not currently declared in your Funding Statement. Please note that funding information should not appear in the Acknowledgments section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: “This research was funded by the United States Centers for Disease Control and Prevention (CDC), through the cooperative agreement grant number 5U01GH1207. Md Saiful Islam and Emily S Gurley has received the funding. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. The findings and conclusions in this report are those of the authors and do not necessarily represent the official position of CDC.” Please include your amended statements within your cover letter; we will change the online submission form on your behalf. 3. Please include a separate caption for each figure in your manuscript. 4. Please ensure that you refer to Figure 2 in your text as, if accepted, production will need this reference to link the reader to the figure [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: No Reviewer #2: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: General comments The authors present the results of a well-designed study of baseline prevalence of positive TST among HCW working at the 4 largest hospitals with pulmonary units for TB patients and a prospective follow-up for those with negative baseline tests. In addition, IGRA testing was also done at one hospital using QFT Gold In-tube assay (QFT). The comparison of TST and QFT results is largely limited to kappa coefficient and ROC curve. Specific comments Methods – How was the 2-step testing done? There is no mention of how many or what proportion of the individuals were positive only on the 2nd test. Were all the initial test results recorded or only those with at least 10 mm of induration? The frequency of “boosting” would be of interest in this setting. Item that must be addressed: There is no mention of obtaining chest radiographs on subjects with positive test results. Were these done or was only a symptom review done? The chest radiograph is considered essential to excluding subclinical TB in the US. Results Items that must be addressed: Table 2 prevalence of positive TST – footnote iv and v do not indicate adjustment for age Table 4 prevalence of positive QFT – footnotes do not include vi. No indication of adjustment for age in footnote iii. Page 15 second sentence states the prevalence of positive TST and QFT were both associated with years of service on pulmonary wards, but this is not indicated in Table 4. Missing analysis: There is a consistent increase in QFT-positivity by age as one expects given the cumulative exposure in the community where they live and work. A more detailed comparison of the age specific variation in concordance and discordance of TST and QFT results by age for the 400-plus HCW with both tests would be of considerable interest. The number and proportion of results that are positive by both, positive for TST alone, QFT alone and negative for both within age categories would be of considerable interest. Those with a positive TST only, tend to be false-positive TST and those with a positive QFT alone tend to be false-positive QFT (except in older individuals) in the context of US HCW but that “tendency” based on follow-up results may not be the same for individuals within this higher-risk population. None of these immunological test results can be interpreted with full confidence of course. Presenting the data on QFT and TST in this setting should include a more detailed analysis and the authors assessment of whether IGRA are useful in this setting. Reviewer #2: RE: PLOS1 D22-14779 “Latent TB infection in health care workers in chest diseases hospitals in Bangladesh” This is an interesting paper describing a cross-sectional survey of health care workers in four hospitals in Bangladesh with a follow up of some (a reasonable proportion) with a repeat TST and or IGRA approximately two years later. Results are interesting in that they indicate an approximate 4% annual risk infection estimated by TST or by QFT. The authors performed two-step tuberculin testing at baseline so the TST conversion rate may be considered reasonably robust although the QFT conversion rate of 4% is certainly within the range of variability previously described for this test, particularly in high incidence settings. Major Comments: 1. The rate of participation at one hospital was 68% at the largest hospital, but the other three smaller hospitals had a much higher participation rate. Some assessment of potential selection bias is important, for example comparing characteristics of workers who did and did not participate – initially and at the 2 year follow-up. 2. On follow up testing two years later the participation in TST was only 53% at the large hospital compared to 84% at the three smaller hospitals. Follow up for QFT was better at 77%. All of this raises again the problems of selection bias terms of who participated and who did not. At minimum, the characteristics of the workers who did or did not participate in the follow up survey should be provided, even as a supplement table. Selection bias could lead to an over or under-estimate of the conversion rate. 3. Several of the risk factors/ characteristics of workers overlap with each other. For example, type of profession is strongly correlated with level of education. Hence to show both without accounting for the other is not that meaningful. I suggest that the level of education should indicate where doctors, nurses and pharmacists lie because it is really the other workers whose level of education may be more variable that are of interest in this parameter. Similarly, age and years of work are strongly correlated. To avoid this problem of being unable to distinguish the effect of age from the effect of years of work the authors should analyze as two non-overlapping variables: (i) age of starting work at the participating hospital, and (ii) years of work at that hospital. In this way one can distinguish the effect of prior exposure until they were hired at the hospital, or exposure since starting work at the Chest hospitals that explains the high initial prevalence of infection. 4. The analysis of incident TST positivity (ie TST conversion) certain factors should not have changed over the two-year interval and should not be included in the model. For example level of education, having lived with someone with TB, years worked on pulmonary TB wards, and years of work as a HCW. What is more relevant is the exposures in the two years interval - whether they worked on the TB wards in the past two years, and if so how many hours per day. Factors that are relevant to baseline or initial prevalence but are not relevant to the incidence of infection over two years should be included in the model (ie “have they lived in the last two years with someone with TB”) which would have been a much more useful question, hence table 3 and table 5 should amended to reflect exposures specifically in the two years since they were tested and negative. 5. A major error, (as far as I can see in the data presented), is in the analysis of the initial TST reactions. Results of the first TST should be analyzed separately from results of the second TST which was to elicit the booster phenomenon. There is good evidence that the “booster phenomenon” is much less specific and much more likely affected by BCG vaccination, non-tuberculosis mycobacteria, as well as remote TB exposure. Hence analyzing initial and second TST together simply introduces misclassification into the exposure of interest which is occupational exposure. I recommend separate analyses as a required reanalysis. 6. I also recommend they drop the comparison of TST and IGRA. This is not novel. And the authors seem to suggest that the IGRA is gold standard for incident infection, when the evidence favours that after baseline two-step TST, it is the TST that is the gold standard for conversion. Obviously this is a matter of debate. Bottom line I don’t think the analysis is all that meaningful nor valuable, hence I suggest dropping table S1 and Figure 2. Minor points: 7. I recognize that two of the authors are based at CDC and an additional one is also at a US institution. However the study is based in Bangladesh, so I believe the authors should refer to WHO recommendations for use of TST or IGRA, not US recommendations (WHO recommends they can be used interchangeably). 8. Along the same lines, perhaps also the term “latent TB infection” which is now mainly a US term should be dropped in favour of “TB infection” which WHO now uses. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 1 |
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PONE-D-22-14779R1Prevalence and incidence of latent tuberculosis infection among healthcare workers in chest diseases hospitals, Bangladesh: putting infection control into contextPLOS ONE Dear Dr. Islam, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Aug 31 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Frederick Quinn Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: (No Response) Reviewer #2: Comment to the authors re P122-14779R1 I initially reviewed this paper some months ago. I found it had many strengths, particularly the careful performance of two-step tuberculin testing and QuantiFERON testing at baseline, and follow-up among employees at one of the four participating hospitals. Plus the use of questionnaire information to look at risk factors for baseline prevalent positive tests and incident positive tests. By and large, the authors have made most important revisions but there remain two issues that must be addressed. 1. Two-step tuberculin testing I disagree with the authors in their continued assertion that it is the final result of the two-step test that is the most precise and valuable from an epidemiologic point of view. They cite a paper published in the Indian Journal of Dermatology which, with all due respect to the two authors of that review, provides incorrect information. There is good evidence that boosting (or a positive second TST shortly after a negative first TST) is related to much more than remote TB exposure but also to BCG vaccination and non-tuberculosis mycobacterial exposure, both of which would have been common in this study population. There was also good evidence that the risk of disease is lower in those with a positive second test compared to the first, which doubtless relates to this lack of specificity. They have performed the analysis I suggested, namely factors associated with the first tuberculin test positivity but relegate this to the supplement. I suggest that the primary analysis should be factors associated with a positive first TST, and the factors associated with the positive second test (ie the booster phenomenon) are in the supplement. The analysis of factors associated with any positive test at baseline should be dropped completely. I personally consider this mandatory. Perhaps the co-authors from CDC can suggest other reviews and guidance on the topic of two-step TST and interpretation and management. 2. Past TB disease exclusion A somewhat more minor point but I think also should be considered strongly by the authors is that the persons with past TB disease were excluded from analyses. This does not really make sense when they are interested in occupational tuberculosis infection. TB disease is the most important manifestation of occupational TB exposure and so these individuals should have been included. If tuberculin testing or QuantiFERON was not done, I would simply assume that they would have had a positive test and classify them as having TB infection. This is only 2% of participants but nevertheless this is an important group and should not be excluded. Minor points: 1. Exposure in hospitals is not just related to the TB ward or to patients with recognized or diagnosed TB. Of course, in Chest Hospitals all patients who are admitted may be screened for TB disease and so the likelihood that patients on other “non-TB” wards actually have active TB disease that is unrecognized may be lower. However in most general hospitals most TB exposures occur from patients who are admitted for other reasons such as “pneumonia”, have unrecognized TB disease. These individuals are not treated, nor isolated and so represent the greatest hazard to workers. Perhaps the authors can comment on this possibility, had they looked at how many patients with TB disease are in fact admitted to other services or other wards. 2. Latent TB Infection VS TB Infection – The authors prefer to stick with LTBI, given that several co-authors are from CDC;they suggest that WHO documents still refer to LTBI – this is incorrect. Older WHO documents may use the term LTBI but current WHO terminology is TB Infection. 3. Burden VS Incidence – “TB burden” reflects population size and incidence. Hence, countries with very large population size but intermediate incidence may have high burden (e.g., China) but for occupational exposure and risk of infection, I think risk is driven by incidence rather than burden. 4. The authors incorrectly state that IGRAS are not affected by immunosuppression, in fact sensitivity is reduced by immunosuppression, particularly HIV infection, particularly for QuantiFERON, which is the test they have used here. In systematic reviews there is little difference in the sensitivity of QuantiFERON VS TST in immunocompromised populations. 5. They also state that IGRAs are less affected by NTM. There is theoretical evidence that NTM may affect IGRAS less but in reality, there is no actual epidemiological data that I am aware of that shows this. Can the authors provide a citation for a study showing this? ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Richard Menzies ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 2 |
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Prevalence and incidence of tuberculosis infection among healthcare workers in chest diseases hospitals, Bangladesh: putting infection control into context PONE-D-22-14779R2 Dear Dr. Islam, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Frederick Quinn Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #2: (No Response) ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #2: (No Response) ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #2: (No Response) ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #2: (No Response) ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #2: (No Response) ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #2: Yes: Dick Menzies ********** |
| Formally Accepted |
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PONE-D-22-14779R2 Prevalence and incidence of tuberculosis infection among healthcare workers in chest diseases hospitals, Bangladesh: putting infection control into context Dear Dr. Islam: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Frederick Quinn Academic Editor PLOS ONE |
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