Peer Review History
| Original SubmissionFebruary 28, 2023 |
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PONE-D-23-05946Vulnerability to climate change of United States marine mammal stocks in the western North Atlantic, Gulf of Mexico, and CaribbeanPLOS ONE Dear Dr. Lettrich, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. We received comments from two reviewers. They are both positive about the work. They expressed some concerns. Please address these concerns in the revisions. My opinion toward the work is slightly more negative than the reviewers (please see my separate comments), but I respect the opinions of the two reviewers. So I plan to ask the same reviewers to review a revised manuscript, first (up to two reviewers) in the next round of reviews. Then, I will decide solely based on the recommendations. Please submit your revised manuscript by May 13 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Masami Fujiwara, PhD Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. We noticed you have some minor occurrence of overlapping text with the following previous publication(s), which needs to be addressed: https://spo.nmfs.noaa.gov/sites/default/files/TMSPO196_508.pdf In your revision ensure you cite all your sources (including your own works), and quote or rephrase any duplicated text outside the methods section. Further consideration is dependent on these concerns being addressed Additional Editor Comments (if provided): The study can be viewed as a special type of meta-analysis. In a typical meta-analysis, each study is treated as one sample whereas the current study treats one researcher as a sample. Of course, treating one study as one sample has a problem; we all know not all studies are created equal. However, treating one reviewer as one sample also has a problem (they are probably not independent; see comments below). I also think the selection of researchers can lead to bias in the results. In the past, I have experience working with marine mammal scientists. Some of them have strong opinions about what they “like” and what they do “not like” about study results. A large amount of subjectivity is unavoidable in scoring (i.e. there is a filter going from data to scores). It would have been more convincing if the scoring was done by experts in population dynamics without much knowledge of marine mammals. I like the part the study also scores the data quality, but there is still a large uncertainty in how those data are interpreted by the researchers. This needs to be acknowledged. The tone of the language in the abstract and discussion suggesting a high level of confidence is not supported by the study results. In general, a large uncertainty in the results of the study is not quantified sufficiently. The researchers are treated as independent samples. But I doubt they are. If they work closely with each other (or their institution’s missions are the same), they are dependent. One of the interesting analyses may be to separate NOAA researchers and others. I noticed there are many NOAA researchers involved in research. I am wondering if the results are different between the two groups. If not, perhaps, we do not worry about the institutional dependency. One may be able to group the research based on the taxa of their expertise. I also suggest bootstrapping researchers for all species at the same time to investigate the bias of certain researchers. Some tend to score low (or high) for all species. These and other potential dependencies of researchers will influence the overall results (potentially leading to over-confidence as well as bias in the results). Further investigation of dependency might make the work slightly more convincing. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: No ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Summary: This manuscript uses an expert solicitation to assess the vulnerability of 108 US East Coast / Gulf of Mexico / Caribbean marine mammal stocks to climate change. Authors assess vulnerability using a robust model that accounts for a suite of physical variables, stock-specific life history traits and stock-specific spatial distribution. Data quality for each stock and variation in responses between experts are considered and presented as well. This work is helpful for identifying which stocks will need targeted conservation and management effort, and also provides a baseline to compare future evaluations of climate vulnerability in these taxa. General comments: Some description of the data presented in tables and figures is appropriate, but this could be pared down in the text. When aggregating results across all 108 stocks, it would be good to remind the readers that these trends will be more representative of delphinids, since they are the majority of the stocks analyzed. This manuscript needs more clarity on how physical variables were treated spatially, and how the spatial representation of these variables were paired up with the geographic distribution of each stock. Specific comments: Line 106: “for others” – do you mean “in other regions”? Line 107: Suggest changing “For example” to “In another example” Line 130: Not sure what is meant by “habitats” in this sentence. Lines 173-200 and Table 1: How were these scores for physical variables (SST, dissolved oxygen, etc.) treated differently for each marine mammal stock based on its geographic distribution? For example, when you are evaluating a marine mammal stock in the GOMx, you wouldn’t include SST from the Gulf of Maine, right? You would need to provide SST metrics (change in mean and change in variability) that were calculated over that stock’s spatial distribution. Line 304: Here it is still confusing how the physical variables were aggregated spatially to be used in comparison with the species range maps. Line 344: I don’t believe “certainty” is an appropriate word here (and in the associated results text). The certainty of your vulnerability scores is intrinsically related to the quality of the data and the expertise and objectivity of the expert participants, neither of which seem to be incorporated into these scores. “Score variance” may be more appropriate here. Fig. 2 seems redundant with Fig. 1 Fig. 3: Please vary the scales along the x axis so that we can see the scores for the non-delphinid taxonomic groups Lines 426-443: This section literally describes the exact numbers shown in Fig. 3. It’s ok to draw readers attention to the most important findings but, as written, much of this text seems redundant and takes up journal space. Line 469: Can you add a sentence here, and perhaps in the figure caption, clarifying that the other attributes did not impact vulnerability scores when they were removed from the analysis? The figure almost looks like there is missing data, but I think these attributes just don’t impact vulnerability. Line 485: Are these unformatted citations? Lines 479-486: This section is biased by the taxonomic skew among the stocks represented in this study. For example, since most of the stocks are dolphins, they dominate the results in this section. I think this analysis would make more sense if it was partitioned by the 5 taxonomic groups Line 578: “most influential” – is this biased to refer to the delphinid taxa? Line 630: I would include “entanglement” explicitly, but you could group this with bycatch by saying “bycatch and entanglement” if you prefer. Line 701-702: Do you mean “data quality scores” here? This is unclear Reviewer #2: This manuscript describes a climate-variability assessment of numerous marine mammal stocks in three different regions using expert elicitation. The manuscript was well written and clearly the product of a lot of effort by the authors. As I am not overly familiar with the methods used in the paper, I particularly appreciated the use of examples throughout to help clarify the methods and interpretation of the results. My few comments below are minor and easily addressed by the authors. My 'biggest' criticism is that the Figures 1 -3 convey the main findings of the paper but they are not very visually appealing. I think it does the manuscript a disservice, particularly given that this is a fairly broad paper that could be of considerable interest, and that some relatively changes would make these figures more impactful. Overall though a really interesting and comprehensive manuscript that I look forward to seeing published. Specific comments: Table 1: Most of these are the same, just being repeated for different variables. To condense, I would suggest having one row each for the change in mean and change in variability for all the variables except circulation and sea level rise, and then separate rows for circulation and sea level rise since the criteria differed for these two variables Figure 3: One of your headings is cut off. I would also suggest using different scales across the column, as bars for non-delphinid groups are difficult to see because of differences in the number of stocks. Line 245: I would suggest removing the NARW abbreviation here. I realize it comes up again in the discussion, but since there is such a large gap between the first mention and the second mention, and that the overall number of mentions are relatively small, I don't think it adds more confusion to use an abbreviation. Figures: It would be nice of there at least one figure that summarized the results in a very visually appearing nature. Perhaps if possible in some sort of map format, although I recognize this may be too challenging given the range differences in some species ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Erin Meyer-Gutbrod Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-23-05946R1Vulnerability to climate change of United States marine mammal stocks in the western North Atlantic, Gulf of Mexico, and CaribbeanPLOS ONE Dear Dr. Lettrich, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Overall, I think the revisions were made appropriately in response to the reviewers’ and my comments. However, you responded to my comment as “Applications of expert elicitation can often leave questions about influence and bias. We used a Delphi approach to minimize biases such as groupthink, deference to authority, and halo effect.” I suggest you include the statement in the text along with brief intuitive descriptions of how the method works to reduce the biases. Please submit your revised manuscript by Aug 26 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Masami Fujiwara, PhD Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Vulnerability to climate change of United States marine mammal stocks in the western North Atlantic, Gulf of Mexico, and Caribbean PONE-D-23-05946R2 Dear Dr. Lettrich, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Masami Fujiwara, PhD Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-23-05946R2 Vulnerability to climate change of United States marine mammal stocks in the western North Atlantic, Gulf of Mexico, and Caribbean Dear Dr. Lettrich: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Masami Fujiwara Academic Editor PLOS ONE |
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