Peer Review History
| Original SubmissionMarch 7, 2023 |
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PONE-D-23-06213Novel Competitive Enzyme-Linked Immunosorbent Assay for the detection of the high-risk Human Papillomavirus 18 E6 oncoproteinPLOS ONE Dear Dr. Castillo, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Your manuscript has been favorably received by all three independent reviewers. However, they have suggested some revisions to improve the manuscript. Please submit your revised manuscript by May 18 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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This is in addition to complying with our image preparation guidelines described at https://journals.plos.org/plosone/s/figures#loc-blot-and-gel-reporting-requirements. These requirements apply both to the main figures and to cropped blot/gel images included in Supporting Information. If the manuscript is positively reviewed, we will ask the authors to provide any missing raw image data for blot/gel results when they submit their first revision. As part of your review, please ensure that figures reporting blot or gel images comply with the journal’s image preparation guidelines and that the original data are provided following the journal’s request. If you have any questions or concerns about blot/gel figures or data for this submission, please email us at plosone@plos.org before issuing a decision letter [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Yes Reviewer #3: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: In this manuscript, Contreras N.E. et al aimed at developing a icELISA to detect high risk HPV18 E6 oncoprotein. This study overall is well designed and significant to improve the diagnostic accuracy of cervical cancer. But the assay developed here can be better supported with more controls and additional experiments to be proved to be a promising novel bioanalytic method for the early detection and quantification HR HPV E6 oncoprotein. Details are listed below. 1. For the first part in the results session that identified the 7D2 mAb, it is not clear to me that if you have also identified other mAb that might be able to detect more of the HR HPV strains but not the LR strains. Is there any other antibodies that you obtain can react with all HR strain without reacting with all LR? If not, it would be more convincing if you include data from some other antibodies to that you obtain in your screening to compare with the 7D2 mAb, like the reactivity assay, wb analysis etc together with 7D2 mAb. In this way you can better prove that this 7D2 mAb is the best you get because it can at least detect the most prevalent HR HPV strain. 2. At the beginning of the second part where you claimed you established a HPV18 E6-GST concentration of 3 μg/ml fixed on the plate and a preincubation of 0.25 μg/ml 7D2 mAb with the sample for 1 h at room temperature to be the optimal assay conditions, could you please provide your data to show how the optimal concentration of E6-GST and the 7D2 mAb as well as the incubation time and temperature was determined? Not clear to me how you established and determined these variables. 3. You have used cervical cell lysates from women with negative cytology in S2 table to show your assay did not detect any signal from no cervical cancer samples, but in the whole paper you have not used any positive cancer clinical sample to test your assay, only demonstrated cell line results. I do think it is important to test in some positive clinical samples to prove your assay is capable and applicable for detecting E6 oncoprotein from clinical cervical cell lysates. 4. For the HEK293T cells data you showed in table 4, it would be better to include the HPV45 E6 expressing cells. But this is a minor point. Reviewer #2: The manuscript entitled "Novel Competitive Enzyme-Linked Immunosorbent Assay for the detection of the high-risk Human Papillomavirus 18 E6 oncoprotein" was done by Contreras et.al. focused on identifying a monoclonal antibody against the E6 protein which is overexpressed in the transformed HPV-positive cancer cells. The authors were able to develop an ELISA assay that was highly specific and sensitive toward the E6 protein from the HPV18 strain. The authors gave great consideration to the point that the monoclonal antibodies should not be cross-reactive in the low-risk HPV types. The authors proposed using this as a promising method for detection of the HPV18. The rationale for the authors to generate such an antibody against HPV18 was due to the fact that there is a very low positive predictive value, especially using cytological testing and molecular diagnosis. Due to this, there is an increase in unnecessary treatment of individuals. To overcome this the authors decided to develop a highly specific and sensitive detection method using indirect competitive ELISA using a monoclonal antibody. To generate the antibodies highly specific towards the E6 protein of the HPV18 they used a tolerization strategy. The authors had a clear hypothesis and the approach used for testing the hypothesis is streamlined by a set experimental design. The quality of data presented and the statistical test are done appropriately to the best of my knowledge. The materials and methods section is complete and gives all the necessary information. Finally, the discussion is well-written and proposes further studies. However, there are some concerns which are as follows. Is the protein HPV18 E6-GST mentioned on line 154 somewhat different than the same mentioned on line 157 which is mentioned as “oncoprotein”? If so what is the difference if not kindly put the same name everywhere to avoid confusion? For the indirect competitive ELISA, what is the HRP labeled to? the HPV E6 or the antibody? Can the authors show the competitive ELISA with direct labeling of the HRP to the antigen or the antibody instead of indirect competitive ELISA? For the Indirect ELISA on line 126, how was the monoclonal antibody already used when this particular EILSA was used for screening the mice with the best immunization? The authors should explain this. Can the authors test the iELISA with some of the clinical samples? Overall the work done by Contreras et.al. is commendable and adds to the necessary information. Reviewer #3: The manuscript titled “Novel Competitive Enzyme-Linked Immunosorbent Assay for the detection of the high-risk Human Papillomavirus 18 E6 oncoprotein” submitted to Plos one, describes a new ELISA technique developed by the authors Natalia E. Contreras, Julieta S. Roldán and Daniela S. Castillo. I appreciate the efforts undertaken by the authors in developing a novel ELISA based assay to detect E6 oncoprotein. It would be of diagnostic relevance if E6 oncoprotein could be detected directly from clinical specimen. I would like to recommend a couple of additional experiments (comments 1&2), an additional table (comment 3) and a few minor corrections (Comments 4-8), which I believe will substantially improve the quality of the article. 1) The test needs to be clinically validated before it can be recommended as screening tool. As a preliminary step authors could test their assay on at least a few clinically confirmed cytology positive/cervical cancer samples 2) HPV DNA PCR test is considered the gold standard test for HPV detection. I would recommend performing a comparative analysis of results from both PCR and this new ELISA test on confirmed cervical cancer biopsy samples. This would be highly informative as it would give out a direct comparison of accuracy, sensitivity and specificity of new method as against the current gold standard. 3) Include a table with sensitivity and specificity of this new test. 4) Lines 265-267: Please restructure the sentence (“The standard curve for the …..” ) for better clarity. The sentence mentions “good correlation to the data”- which data are the authors referring to? 5) Supplementary table 3 needs to be restructured: The sequence identity matrix several duplicate values- eg: either the last 2 rows or last 2 columns could be deleted without loss of any information; even then the value 55.6 (HPV 18) remains repeated. 6) Line 102: Word “dialysis” misspelt 7) Line 131: “Tetramethylbenzidine” misspelt 8) Line 162: Word “subcloned” misspelt ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: Yes: Priya Ramesh Prabhu ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. 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| Revision 1 |
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Novel competitive enzyme-linked immunosorbent assay for the detection of the high-risk Human Papillomavirus 18 E6 oncoprotein PONE-D-23-06213R1 Dear Dr. Castillo, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Arunava Roy, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed Reviewer #3: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: I understand the difficulty to get the exact HPV18 clinical sample, but still in the future it would be useful that you have positive data not just negative data to show your elisa assay work for positive clinical sample. Reviewer #2: (No Response) Reviewer #3: (No Response) ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: Yes: Priya R Prabhu ********** |
| Formally Accepted |
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PONE-D-23-06213R1 Novel competitive enzyme-linked immunosorbent assay for the detection of the high-risk Human Papillomavirus 18 E6 oncoprotein Dear Dr. Castillo: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Arunava Roy Academic Editor PLOS ONE |
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