Peer Review History
| Original SubmissionMay 22, 2023 |
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PONE-D-23-15730Exploring the Chemical Composition, In Vitro and in Silico Study of the Antimicrobial Properties of Annonaceae Species Essential Oils from the AmazonPLOS ONE Dear Dr. de Oliveira, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please consider and answer the questions by both reviewers Please submit your revised manuscript by Aug 09 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Please review our guidelines at https://journals.plos.org/plosone/s/materials-and-software-sharing#loc-sharing-code and ensure that your code is shared in a way that follows best practice and facilitates reproducibility and reuse. 4. We noticed you have some minor occurrence of overlapping text with the following previous publication(s), which needs to be addressed: Insight into the Interaction Mechanism of Nicotine, NNK, and NNN with Cytochrome P450 2A13 Based on Molecular Dynamics Simulation - https://doi.org/10.1021/acs.jcim.9b00741 In your revision ensure you cite all your sources (including your own works), and quote or rephrase any duplicated text outside the methods section. Further consideration is dependent on these concerns being addressed. 5. Thank you for stating the following financial disclosure: "The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript." 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Please see our guidelines for more information on what we consider unacceptable restrictions to publicly sharing data: http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. Note that it is not acceptable for the authors to be the sole named individuals responsible for ensuring data access. We will update your Data Availability statement to reflect the information you provide in your cover letter. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: No ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Some concerns: Why cytotoxic activity and selectivity index were not done or were not presented? Title The term antimicrobial is too broad in this title as only Candida strains were used. I suggest changing from 'antimicrobial properties' for ‘anticandidal properties’. Abstract - In the abstract section it is not recommended to use acronyms such as GC-MS, MIC, MFC. - All strain names must be spelled out -Specify if all essential oil present same qualitative composition. What about quantitative? Materials and Methods section 2.4. Antifungal Activity of the Essential Oils Include program used to calculate the MIC values. 2.5. Molecular Docking Line 160: using Gaussian09 program Line 168: ‘energy threshold equal to 100’ ??? What’s the unity? References section The authors must standardize the references according to the rules of the PlosONE Journal, i.e., number 07, 17,23,27, 30, 34, 36, 39, 40, 41, 43 and 52. Reviewer #2: The manuscript PONE-D-23-15730 entitled “Exploring the Chemical Composition, In Vitro and in Silico Study of the Antimicrobial Properties of Annonaceae Species Essential Oils from the Amazon” reports the composition of the essential oils (EOs) of several plants of the Annonaceae family and explored their potential interaction with the proteins Sterol 14α-Demethylase Cytochrome P450, as their molecular target using a molecular docking approach. The Knowledge added by the manuscript is qualified in the context of the antimicrobial activity of the tested EOs, but just include the molecular docking is not sufficient to improve the value of the study, more validation and exploitation on the use of these EOs is required to considerer this manuscript to be published. Following the suggestion of minor alterations 1. There is a link in the title to an article ( https://doi.org/10.3390/molecules17089540) 2. Line 36 MFC first in full 3. Line 36-37 rewrite the sentence is Grammarly confused 4. Line 41 change ntimicrobial to antimicrobial 5. Line 82 change were use to were used 6. Line 92 indicate the first and surname of J. O. 7. Line 110 revise the order of your references here and all over the manuscript 8. Line 133 indicate the volume used and the respective concentration for nystatin. 9. Line 146 eliminate in a bacteriological incubator 10. Line 148 and this concentration was considered the Minimum Inhibitory Concentration? 11. Line 152 MIC in full first 12. Line 153 what dilution? what the authors diluted? 13. Line 155 this is not clear. Rewrite this section. Moreover, the cited reference is in Portuguese. 14. Line 234 check the sentence 15. Line 272 As the authors can observe from the literature cited, is recommended to use the concentration of the EO in ug/mL or mg/mL, and not v/v. 16. Line 272-278 Line 266-278. A proper discussion must be provided, not a statement of the results reported by other studies. 17. Line 285 what paper? the current study or the previous mentioned? 18. Figure 1 and 2 The legend of the Figures must be at the bottom of the Figure. 19. Line 385 the format of the references requires a deep revision. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: FRANCISCO JOSE TORRES DE AQUINO Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 1 |
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Exploring the Chemical Composition, In Vitro and in Silico Study of the Anticandidal Properties of Annonaceae Species Essential Oils from the Amazon PONE-D-23-15730R1 Dear Dr. de Oliveira, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Guadalupe Virginia Nevárez-Moorillón, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-23-15730R1 Exploring the Chemical Composition, In Vitro and in Silico Study of the Anticandidal Properties of Annonaceae Species Essential Oils from the Amazon Dear Dr. de Oliveira: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Guadalupe Virginia Nevárez-Moorillón Academic Editor PLOS ONE |
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