Peer Review History
| Original SubmissionDecember 13, 2022 |
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PONE-D-22-34145Evaluation of sea turtle morbidity and mortality within the central Indian Ocean from 12 years of data shows high prevalence of ghost net entanglement.PLOS ONE Dear Dr. Himpson, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Mar 06 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Graeme Hays Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. In your Data Availability statement, you have not specified where the minimal data set underlying the results described in your manuscript can be found. PLOS defines a study's minimal data set as the underlying data used to reach the conclusions drawn in the manuscript and any additional data required to replicate the reported study findings in their entirety. All PLOS journals require that the minimal data set be made fully available. For more information about our data policy, please see http://journals.plos.org/plosone/s/data-availability. Upon re-submitting your revised manuscript, please upload your study’s minimal underlying data set as either Supporting Information files or to a stable, public repository and include the relevant URLs, DOIs, or accession numbers within your revised cover letter. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. Any potentially identifying patient information must be fully anonymized. Important: If there are ethical or legal restrictions to sharing your data publicly, please explain these restrictions in detail. Please see our guidelines for more information on what we consider unacceptable restrictions to publicly sharing data: http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. Note that it is not acceptable for the authors to be the sole named individuals responsible for ensuring data access. We will update your Data Availability statement to reflect the information you provide in your cover letter. 3. We note that you have stated that you will provide repository information for your data at acceptance. Should your manuscript be accepted for publication, we will hold it until you provide the relevant accession numbers or DOIs necessary to access your data. If you wish to make changes to your Data Availability statement, please describe these changes in your cover letter and we will update your Data Availability statement to reflect the information you provide. Additional Editor Comments: We now have three detailed and constructive reviews of your manuscript. You will see that the referees liked aspects of the manuscript but there are several concerns. You’ll see that the referees consistently thought that your writing was a little too parochial and the results poorly presented. On balance I think that if you take care with a major revision, this manuscript might still be suitable for PLoS1 and so I am recommending that you revise the manuscript taking all the comments into consideration. I expect that this major revision will take some time as all the referees called for some substantive changes. I look forward to seeing a revision. All best wishes, Graeme Hays [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: No Reviewer #2: Yes Reviewer #3: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: No Reviewer #2: Yes Reviewer #3: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: No Reviewer #3: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: No Reviewer #2: Yes Reviewer #3: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This study presents an interesting insight on the prevalence of ghost-fishing in the Maldives, driving strandings of sea turtles. However, at present, this work is not placed in sufficient context of the wider literature, limiting the interest of the readership. Also, no figures/tables were provided, making interpretation very difficult. I have made detailed recommendations up to the end of the results; however, I have not assessed the discussion, due to the extent of revision required throughout. With careful and detailed revision, this could make a very interesting contribution to the journal. Abstract Line 25-7; this is too broad; what is the key knowledge gap that needs to be explored in general? Maybe amend to something like “Quantifying how ghost fishing contributes to anthropogenic-driven losses of sea turtles could help guide marine management; however…” why has this not been done so far, what limitations have stopped this, why do you have the tools to achieve it now? Line 27-8, this is melodramatic and again too broad; what information is missing in this region, and why, due to a lack of funds, equipment, technology? Clarify. Line 29 – separate your aim from your key finding “Here, we utilised 12 years of stranding and rehabilitation data from the Republic of the Maldives to identify key threats to marine turtles in this region.” State which 12 years and whether this coverage was nationwide or biased. Then state the results “Entanglement in ghost nets represented the leading cause of injuries and strandings (66.2% of cases).” It is not clear what the “regions” you were referring to here, if you want to make a comparison to the wider literature, this should be done in the discussion, as here it would mean your needing to add citations, which is not permitted. The Abstract should present your results. Line 33. Make this a new sentence, and avoid referring to the wider literature. Line 35, what do you mean by “non resident” and “resident”– non resident to where, as you state the study was done at a national scale? This does not have context. The reader must be informed of why you are using these different terms. This should be your first statement of your Abstract results, then percentage of human causes, then the bycatch vs ghost fishing. Line 37-38, this result while interesting, does not contribute to your narrative here; remove it, or give some interpretation of why it is relevant to the ghost fishing bias. “and identifies several 40 key areas where current knowledge of sea turtle ecology in this region is lacking.” – delete, this does not convey useful information; it is a throwaway statement that could be placed on any paper. “However, for the 41 findings of this study to impact the status of marine turtles they must be implemented into practice and 42 policy.” – also delete this, it weakens your final statement of the previous sentence. Keywords – missing Introduction Please check that citations are formatted correctly. This entire section requires careful revision. The introduction is too long and too turtle centred. There are too many short paragraphs with no clear message. I advise that this section is carefully revised taking the broad readership of the journal into consideration. I would advise the following Paragraph 1 – What is the current prevailing threat to marine vertebrates globally, turtles are one of several groups threatened by human activities at sea. There is a vast global literature on this, and you can identify ghost fishing as one such component here and how it compares to other human caused mortality. Paragraph 2 – Ghost fishing – focus on detail on this, and whether threats are uniform globally across marine vertebrates, and if not identify potential reasons why not. Paragraph 3 – Sea turtles and threats at sea; draw on the wide literature of human caused threats at sea (see Wallace et al. 2010 and associated publications), and in particular explore the literature around ghost fishing and sea turtles; if it is limited, here, highlight why, what approaches work best with detecting this effect, i.e. draw on rehabilitation and strandings and the pros/cons of using such literature. Paragraph 4 – your study aims and hypotheses, along with main approach, study region. What did you expect to find? Line 102 – “by comparing these findings to other regions” – this statement needs careful reconsideration; this implies you conducted an exhaustive literature review; if this is the case, then in your Paragraph 4, where you state your aims, you also need to state that your work is a combination of both empirical data and a wider literature review. This must be clarified in the abstract and the exact approach of the review stated in the methods. Line 104-5, this is fine Line 106 – it is not clear how this is feasible, remove Methods Line 110, just put the coordinates in parentheses at the end of the last sentence. A figure is required showing the entire nation and position of the two atolls, along with the catchment area for strandings assessed here. No tables or figures are provided on the manuscript, making evaluation difficult. Line 128 – what are circumstantial data, give some examples of what this includes. Line 144 – at the site or on arrival? If at the site, how was this standardized across different people finding animals? Change disposition to status throughout. Line 162, were necroposies done to check for blockages? If not, you cannot state if this is natural. Line 163, it is not clear why husbandry fits here. At stranding, husbandry is not relevant; if they survive rehabilitation cannot really be determined as a husbandry issue. The context of husbandry needs careful consideration. How do you assess if husbandry was poor? You do not state anywhere what area your strandings covered – is it national? How do you overcome bias to populated areas? Results Supporting tables and figures are required. This needs to be broken into 3-4 key subsections each supported by a clear figure. Shift all percentages into tables, then revise your entire text to focus on the key points of interest. By delineating clear subsections, you can then develop some clear hypothesis testing. Line 185, how do you get a female bias for adult hawksbills if no adults were recorded? Line 185, you simply state, The adult sex ratio was X:X for green turtles and X:X for olives. What is this sex ratio based on, the stranded animals? If something else, more explanation of how it was obtained is required in the methods. Line 188-191, what about inhabited vs uninhabited islands? A map showing the distribution of all strandigns for the 3 species (different colours) and size classes should be presented, along with highlighting inhabited islands. Line 192, while turtles were found entangled in nets, this might easily be just the end point, i.e. turtle gets infection, floats, becomes entangled; entanglement itself might not be the primary cause. How do you address this? For instance, all animals could have been floating, then become entangled; the key point is to find the initial cause for floating. Line 192-5, this needs to be presented graphically. Graphs are required to support the data throughout this section; once you have graphs, you can then interpret the key points of interest, rather than listing everything. Line 219 – were necropsies/xrays conducted? Reviewer #2: Here the causes of injury and reasons for mortality are reported for turtles found stranded or floating in the Maldives, Indian Ocean. Is it concluded that entanglement in ghost nets is a key source of injury and mortality. This is an interesting manuscript that I enjoyed reading. Some nice data are presented. I have some suggestions to improve the final version. With a little care, these revisions should be straightforward to deal with. 1. Line 25. “Anthropogenic activities are driving the global decline of sea turtle populations. Sensationalist as well as incorrect. You need to be a little more honest. See: Mazaris AD et al. (2017). Global sea turtle conservation successes. Science Advances 3: e1600730. https://doi.org/10.1126/sciadv.1600730 I think throughout (e.g. start of Intro, lines 45-52) you need to say that at many sites around the world, sea turtle numbers are increasing due to conservation efforts (Mazaris). But regardless, sea turtles still face threats and so to facilitate further population increases it is important to both identify and then mitigate threats. 2. Line 34. “ … causes of admission …” Reads poorly as, in the abstract, you have not mentioned anything about admission to a rehab centre being the basis for the data collection. 3. Line 77. “Despite having large populations of sea turtles, the central Indian Ocean is one region where evaluation of threats has been neglected …” Can you add some details about “large populations”. E.g. see work of Jeanne Mortimer and others for regional assessments of nesting numbers – see: https://doi.org/10.1017/S0030605319001108 4. Line 85. “However, numbers of both species are currently declining.” Can you qualify this statement ? Where is this info published ? 5. Line 138. “Green turtles with CCL greater than 95cm (males) and 100cm (females) were classed as adults …” Can you estimate the probability of a mis-id of life stage, e.g. a sub-adult male being classified as a female ? This is important as later you report sex ratios, but I suspect you’ll have quite a few mis-ids. 6. Lines 162. “… cachexia (emaciation with no discernible primary cause …” How was this recorded ? e.g. some threshold residual value from a length:weight relationship ? Or some objective scoring (e.g. see Heithaus/ Thomson work in Shark Bay) or did you just make a subjective best guess ? That’s fine. Just explain what you have done. 7. Line 207. “… was entanglement in ghost fishing nets or similar materials (66.2%, n=251) with wounds characteristic of net or line entrapment identified in both entangled turtles (n=211) and in those found floating or beached (n=40) …” If a turtle just has wounds characteristic of nets or lines, how do you know this was a “ghost net” and not just a net being used by a fisherman who released the turtle ? 8. Line 226. Boat strike. Was this associated with nearby resorts ? I would have a few lines of the Discussion about boat strikes. This has been widely reported around the world (e.g. see Gail Schofield’s work in Greece, https://doi.org/10.1002/ecy.3027 and also in the USA, see Tony Tucker). Boat strike is particularly associated with high boating traffic and had led to speed restrictions in high use turtle areas in the US and Greece. 9. Line 286. You mention where Olive Ridley likely may have come from. Similarly can you detail some of the areas that adult greens and hawksbills have come from ? There has been satellite tracking showing adult green from the Chagos Archipelago travel to the Maldives. But adult hawksbills from Chagos likely do not travel to the Maldives … rather all the tracked animals stay within Chagos (e.g. see https://doi.org/10.1098/rsif.2021.0859). So I guess any adult hawksbills you see also nest in the Maldives ? 10 There are no figures. Perhaps think of 1 or 2 key results to show in a graph ? e.g. a map showing the number of reports came from different places in the Maldives. Perhaps a photo of a stranded turtle in a ghost net. 11. “Poaching”. I could not see anything in the methods about how this was ascertained. Describe your method. Include a photo ? In summary, a nice piece of work with some interesting results. Well done to the authors on completing such a nice study. Graeme Hays Reviewer #3: See attached review with suggestions to improve the manuscript. It was difficult to state that the analysis was appropriate when no supporting data were provided and no tables or figures were included. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 1 |
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PONE-D-22-34145R1Evaluation of sea turtle morbidity and mortality within the Indian Ocean from 12 years of data shows high prevalence of ghost net entanglement.PLOS ONE Dear Dr. Himpson, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ==============================Please make the final suggested corrections to the figures to improve their clarity.============================== Please submit your revised manuscript by Aug 12 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Graeme Hays Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. Additional Editor Comments: The authors have done a good job with the revisions. For future manuscripts, I would encourage you not to write vague things in your responses letter like “This has been changed in the Discussion”. It is far easier for referees, if you cut and paste in your revised text in the cover letter, so they can quickly see what you have done, rather than having to hint through the manuscript for the changes. For the histogram figures, I would perhaps not go with subtle differences in shades of blue. This is not very clear. Also note on the y-axis title, “Proportion” means a number from 0 to 1. “Percentage” means a number from 0-100. Also I would give a more information axis title that just “Proportion”. The normal approach when producing a scientific graph is to have an axis title and, in brackets, the unit. “Percentage” is the unit. Well done. Graeme Hays [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #2: N/A ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #2: The authors have done a good job with the revisions. For future manuscripts, I would encourage you not to write vague things in your responses letter like “This has been changed in the Discussion”. It is far easier for referees, if you cut and paste in your revised text in the cover letter, so they can quickly see what you have done, rather than having to hint through the manuscript for the changes. For the histogram figures, I would perhaps not go with subtle differences in shades of blue. This is not very clear. Also note on the y-axis title, “Proportion” means a number from 0 to 1. “Percentage” means a number from 0-100. Also I would give a more information axis title that just “Proportion”. The normal approach when producing a scientific graph is to have a an axis title and, in brackets, the unit. “Percentage” is the unit. Well done. Graeme Hays ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Evaluation of sea turtle morbidity and mortality within the Indian Ocean from 12 years of data shows high prevalence of ghost net entanglement. PONE-D-22-34145R2 Dear Dr. Himpson, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Graeme Hays Academic Editor PLOS ONE Additional Editor Comments (optional): The authors have made some effort to revise the manuscript in line with the final comments. I think this manuscript can now be accepted for publication. Graeme Hays Reviewers' comments: |
| Formally Accepted |
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PONE-D-22-34145R2 Evaluation of sea turtle morbidity and mortality within the Indian Ocean from 12 years of data shows high prevalence of ghost net entanglement. Dear Dr. Himpson: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Professor Graeme Hays Academic Editor PLOS ONE |
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