Peer Review History
| Original SubmissionMarch 15, 2023 |
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PONE-D-23-07657Diversity and prevalence of zoonotic infections at the animal-human interface generated by primate trafficking in PeruPLOS ONE Dear Dr. Mendoza Becerra, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please, pay attention to the comments and suggestions made by Reviewer #3. English should be revised. Please submit your revised manuscript by Jun 03 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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We recommend that you contact the original copyright holder with the Content Permission Form (http://journals.plos.org/plosone/s/file?id=7c09/content-permission-form.pdf) and the following text: “I request permission for the open-access journal PLOS ONE to publish XXX under the Creative Commons Attribution License (CCAL) CC BY 4.0 (http://creativecommons.org/licenses/by/4.0/). Please be aware that this license allows unrestricted use and distribution, even commercially, by third parties. Please reply and provide explicit written permission to publish XXX under a CC BY license and complete the attached form.” Please upload the completed Content Permission Form or other proof of granted permissions as an ""Other"" file with your submission. In the figure caption of the copyrighted figure, please include the following text: “Reprinted from [ref] under a CC BY license, with permission from [name of publisher], original copyright [original copyright year].” 2. If you are unable to obtain permission from the original copyright holder to publish these figures under the CC BY 4.0 license or if the copyright holder’s requirements are incompatible with the CC BY 4.0 license, please either i) remove the figure or ii) supply a replacement figure that complies with the CC BY 4.0 license. Please check copyright information on all replacement figures and update the figure caption with source information. If applicable, please specify in the figure caption text when a figure is similar but not identical to the original image and is therefore for illustrative purposes only. Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: No ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: It is an original contribution, the document should define and clarify the wording according to the type of parasite and it is evident that in the wording there is a mixture of parasite types and taxonomic categories. In Table 2, in the values of total samples per genus, primate species, the samples analysed per species should be presented, avoiding presenting the results as total samples per genus. The discussion is encouraged to be based on the analysis of prevalences and diversities by species and not only by primate genus. Reviewer #2: This is a remarkable study of the zoonotic parasites in trafficked primates in Peru. It is an outstanding sampling, diagnosis and analytical effort. The manuscript is clear, well written, organized, an the results are highly relevant for primate parasitology, primate conservation and public health; thus, I suggest publication. There are just a few minor details that I enlist below: Line 71: maybe “infectious diseases” Line 74: since authors are talking about parasite richness I recommend “number of parasite taxa” to avoid confusion with abundance estimates. Lines 179 -180: “parasite taxa” referring to my previous comment. Line 199: maybe mentioned the R packages employed. Lines 218 and 222: “31 parasite taxa”, and “32 parasite taxa”. To avoid confusion with abundance Lines 294-313: It is important to mention somewhere in this paragraph, that even though you found in monkeys parasites that can also infect humans, the direction of transmission either monkey-human or human-monkey remains to be determine. Because, as you mentioned later in the discussion, what prevents a monkey to get infected by a human parasite from their captor or owner or keeper? Finally, I strongly suggest the authors to define either in the introduction or in methods the way their employing the term “zoonotic”. It is clear to me that they refer to transmission in both directions; but nowadays this term is used in different contexts, for example, the WHO define it as “an infectious disease that has jumped from a non-human animal to humans”, while the CDC states “Zoonotic diseases (also known as zoonoses) are caused by germs that spread between animals and people”. Thus a clear definition would guide the reader to the approach that authors are using in the study Reviewer #3: This manuscript is aimed to compilate the information on pathogens infecting non- human primates from three different contexts (captivity, households, and trade) in nine locations in Peru, through a cross-sectional study carried out between 2010 and 2012. The subject of the manuscript is relevant on the primate parasitology topic and in the One-Health perspective. This manuscript fully corresponds to the scope of the journal. I consider that the manuscript needs some modifications, clarifications, and corrections before being considered for publication, as well as a general English revision. Some commentaries and suggestions are described below: Title The title states “primate trafficking”, however, according to the methods also scenarios of captivity and pet were screened. Thus, I suggest modifying the title to make it more accurate. Abstract - Line 35: “32 parasite taxa” instead of “32 parasites”. - Line 38: as not all parasites were identified at the species level, I would suggest changing “parasite species richness” to “parasite richness”/ “parasite taxa richness” along the manuscript. - Line 43: “humans” instead of “human”. -Please include some details about the methods used for parasite identification (e.g. light microscopy, bacteriological culture, and PCR), and type of samples collected. Key words - According to the international primatological community, the term “Neotropical primates” should be avoided because of the colonial overtones. Please modify it. Introduction - Line 78: delete “all of them platyrrhine monkeys”. - Line 88: 320 parasite species? Parasite taxa? Please specify. - Include abbreviation for “non-human primates” along the document. - Please include some specific details about previous reports of parasites infecting non-human primates in Peru. If available, also include the parasite’s prevalence, as it is a topic dealt with in this manuscript. Methods - Lines 118-122: this information is more suitable for the introduction section. - Table 1: “Dientamoeba” instead of “Dientomoeba” - Line 145: “thin” instead of “think” - Line 159: it is stated only “captive monkeys”, please specify if you are referring also to the other animal-human contexts. - Line 169: “for each parasite taxa” instead of “for each parasite” - Line 174: “number of parasite taxa” instead of “number of parasites”. - Line 184: “context” instead of “contexts” Results - Line 208: “including” instead of “covering” - Table 2: “cassiquiarensis” instead of “cassiquairensis”, “parasite richness”/ “parasite taxa richness” instead of “parasite species richness (PSR)”. - Line 222: “parasitesº”? or parasite taxa?. Please confirm. - Table 3: Please modify the terms and abbreviations for “OWM: Old World Monkeys” and “NP: Neotropical primates” - Line 260: “nine parasite taxa” instead of “nine parasites”. Discussion - Line 288: please modify this sentence “widespread zoonotic infections are a daily threat” as the sampling was conducted more than ten years ago, the actual situation could be different. - Lines 294-297: this information is more suitable for the introduction section. - Line 403: “parasite taxa” instead of “parasite species”. - Lines 393-403: please add some information on previously reported parasites infecting free-ranging monkeys in Peru. - Line 448: “identified” instead of “identify”. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-23-07657R1Diversity and prevalence of zoonotic infections at the animal-human interface of primate trafficking in PeruPLOS ONE Dear Dr. Mendoza, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Aug 31 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Érika Martins Braga, Ph.D. Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. Additional Editor Comments: The authors have satisfactorily addressed most of all review comments and made the necessary changes to the manuscript. A particular aspect that warrants consideration is the scarcity of information regarding the prevalence of Plasmodium malariae/Plasmodium brasilianum infections on a global scale and in the Amazon basin, despite the anticipation of a low prevalence and minimal health impact. Therefore, it is essential to thoroughly explore this subject (see line 336), taking into account the zoonotic nature of these species but not other human malaria species such as Plasmodium falciparum and Plasmodium vixax. Please, also correct Trypanosoma minasense in line 374. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #2: All comments have been addressed Reviewer #3: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #2: Yes Reviewer #3: (No Response) ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #2: Yes Reviewer #3: (No Response) ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #2: Yes Reviewer #3: (No Response) ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #2: Yes Reviewer #3: (No Response) ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #2: (No Response) Reviewer #3: (No Response) ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #2: No Reviewer #3: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Diversity and prevalence of zoonotic infections at the animal-human interface of primate trafficking in Peru PONE-D-23-07657R2 Dear Dr. Mendoza, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Érika Martins Braga, Ph.D. Academic Editor PLOS ONE |
| Formally Accepted |
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PONE-D-23-07657R1 Diversity and prevalence of zoonotic infections at the animal-human interface of primate trafficking in Peru Dear Dr. Mendoza: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. M. Andreína Pacheco Academic Editor PLOS ONE |
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