Peer Review History
| Original SubmissionMarch 28, 2023 |
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Transfer Alert
This paper was transferred from another journal. As a result, its full editorial history (including decision letters, peer reviews and author responses) may not be present.
PONE-D-23-09244Novel FlgV ring is required for optimal flagellar motility of Helicobacter pyloriPLOS ONE Dear Dr. Hoover, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jun 01 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org.When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Please add a citation to support this phrase or upload the data that corresponds with these findings to a stable repository (such as Figshare or Dryad) and provide and URLs, DOIs, or accession numbers that may be used to access these data. Or, if the data are not a core part of the research being presented in your study, we ask that you remove the phrase that refers to these data. 4. Please include a copy of Table 4 which you refer to in your text on page 18. 5. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. 6. Please review your reference list to ensure that it is complete and correct. 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Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: N/A Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This manuscript describes the identification of protein that forms a previously uncharacterised ring structure on the flagellar motor of Helicobacter pylori of the Campylobacterota. The authors found that FlgV is required for full flagellation and motility in H. pylori, and proceeded to demonstrate using cryoelectron tomography that FlgV forms a cytoplasmic ring. The paper is overall reasonably well-written and essentially scientifically sound, and presents a nice advance in putting the pieces of the puzzle together that at the structures of the Campylobacterota flagella motors. - The title is grammatically poorly formed, and requires an article ("A novel ring of FlgV"?) - although "novel" is over-used and essentially meaningless. How about "A cytoplasmic ring of FlgV is required for optimal..."? - The abstract is misleading, hinting that this is the first time FlgV has been shown to be required for motility: "Here, we provide the first evidence that deletion of flgV in H. pylori B128 and a highly motile variant of H. pylori G27 (G27M) results in reduced motility in soft agar medium.". This fails to capture the fact that FlgV has already been characterised. Gao 2014 identified FlgV using a screen that essentially selected for less motile variants, and as they stated: "Although some mutations could indirectly lead to lack of motility, through a variety of functional, biochemical, and in vivo imaging analyses we have provided strong evidence that the genes we have identified encode factors directly involved in the assembly and/or function of the flagellar apparatus." - Line 44: MotA has four transmembrane helices, not domains. - Line 48: It is speculation than MotB rotates within MotA - don't present as fact. - Line 50: "Campylobacterota", not "H. pylori"; worth citing https://mbio.asm.org/content/11/1/e02286-19 - Line 91: worth reporting identity/similarity percentages here. - Line 99: "strongly suggest" is more appropriate than "strong evidence". - Line 128: Worth highlighting to non-expert readers that Arcobacter has a mystery, "weird" outlier motor, so this result not expected, but this protein is likely to be FlgV. - Line 131: I think G27M is a new result? Phrase it as such by writing this sentence in present tense (or provide citation if it's a previous result). - Entire paragraph starting Line 131: I don't understand why you did this work in non-standard strain G27M instead of G27? Was it because you can more sensitively assay motility using G27M? Spell it out to your readers. I'd have preferred you to have mentioned the WT B128 result first, THEN move into a non-standard strain, although don't understand why you used B128 instead of the correct comparison, G27? - Line 185: Glu 71,72 come out of the blue - need introduction. - Paragraph commencing line 196: this is currently fantasy/speculation. I'd prefer the authors either support this hypothesis with relevant fliF mutant results, or remove or greatly tone-down this paragraph. Use words like "suggestive" and "speculative" to help guide your readers to understand the underlying science. - Line 221: worth acknowledging that this density was previously highlighted in Campylobacter jejuni by the yellow arrows in Fig. 2 of http://www.pnas.org/content/early/2016/03/09/1518952113 and that your work is nicely consistent/explanatory with previous work. - Line 237: better phrased, "To further assess whether FlgV forms..." (in science we don't try to obtain evidence for a specific hypothesis, as this biases results - rather, we put hypotheses to the test). - Figure 4: labels need to be larger. Reviewer #2: This paper aimed to characterise the role of the protein FlgV, a component of the bacterial flagellum, in the human pathogen H. pylori. This protein had previously been identified in C. Jejuni, but its role if flagellum biogenesis and/or function had not been determined. Here, the authors demonstrate that FlgV plays an important role in motility, by promoting flagellum assembly, but also contributes to the flagellum rotation mechanism. Modelling of this protein suggests that it is likely an integral membrane protein, that interacts with the the flagellum MS-ring protein FliF. Finally, very elegant sub-tomogram averaging experiments link FlgV to unattributed density between the MS-ring, and the C-ring, in the cytoplasm. Collectively, this is a short study, that fills a important gap in our understanding of high-torque-generating flagella such as those of C. Jejune and H. pylori. The manuscript is clear and well-written, and I only have a few minor comments, that would help with clarity and completeness of the reported work. - Lines 64-66: Some of the mentioned symmetries were shown to be artefacts of FliF in isolation, and were not not found in FliF within the full flagellum HBB structure (Tan et al, Cell, 2021). The true oligomeric state of FliF is 34, with the inner ring (RBM2) having 23-fold symmetry. - Figure 1b: What does the last operon correspond to? - Lines 96-97: I think it would be relevant to show the predicted TM topology, in the supplementary material. - Figure 2C: For AlphaFold modelling, it's essential to show the pLDDT plot, and/or the model Color-coded by confidence, to get a sense of how accurate the prediction is. - Figure 2: For completeness, a photo of agar plate, a selection of electron micrograph of cells used for counting the flagella, and a table including the number of flagella for each mutant, should be added in the supplementary material. - Lines 179-183: Showing a multiple alignment of the FlgV sequences, with the GxxxG motif indicated and the predicted tomopogy, would be really helpful. - Figure 3I, J: These would gain to have additional labels for the FliL ring, which is only mentioned in the legend. - Figure 3: Could the authors do a map subtraction, between WT and DflgV, and also between WT and flgV-YFP, to better highlight the regions of density that have changed? - Line 250: This could gain from additional labels, an/or a self-rotation analysis to better illustrate the proposed stoichiometry. - Figure 4: The model suggests that FlgV is in partly in the IM - should be shown in 4G. Does the non-TM region of the protein fits in the density? ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Julien Bergeron ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". 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| Revision 1 |
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FlgV forms a flagellar motor ring that is required for optimal motility in Helicobacter pylori PONE-D-23-09244R1 Dear Dr. Hoover, Thank you for addressing the reviewer's comments and for the submission of the revised manuscript. It has been sent back to the two original reviewers who noticed that you have appropriately addressed their comments and now recommend publication of your work. I am therefore please to accept your manuscript for publication. Please note that it will be formally accepted once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Eric Cascales Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: I am satisfied with the Author's response to my suggestions and am happy with the manuscript being published. Reviewer #2: The authors have addressed all the points from both reviewers, and I am happy to recommend the publication of this manuscript in PLoS One. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Julien Bergeron ********** |
| Formally Accepted |
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PONE-D-23-09244R1 FlgV forms a flagellar motor ring that is required for optimal motility of Helicobacter pylori Dear Dr. Hoover: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Eric Cascales Academic Editor PLOS ONE |
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