Peer Review History
| Original SubmissionNovember 29, 2022 |
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PONE-D-22-32802The Burden of HCV among Patients Enrolled at the Opioid Substitution Therapy Clinic in Bihar: A Cross-Sectional StudyPLOS ONE Dear Dr. Pandey, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Mar 12 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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"Upon re-submitting your revised manuscript, please upload your study’s minimal underlying data set as either Supporting Information files or to a stable, public repository and include the relevant URLs, DOIs, or accession numbers within your revised cover letter. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. Any potentially identifying patient information must be fully anonymized. Important: If there are ethical or legal restrictions to sharing your data publicly, please explain these restrictions in detail. Please see our guidelines for more information on what we consider unacceptable restrictions to publicly sharing data: http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. Note that it is not acceptable for the authors to be the sole named individuals responsible for ensuring data access. We will update your Data Availability statement to reflect the information you provide in your cover letter. 4. Please amend your authorship list in your manuscript file to include author Vidya Nand Rabi Das. 5. Please include your full ethics statement in the ‘Methods’ section of your manuscript file. In your statement, please include the full name of the IRB or ethics committee who approved or waived your study, as well as whether or not you obtained informed written or verbal consent. If consent was waived for your study, please include this information in your statement as well. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: No ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Summary This study used medical records from an OST clinic to estimate the HCV prevalence among clients and identify characteristics associated with HCV. The authors use the findings to reiterate their support for increased resources to integrate HCV testing into OST clinics in Bihar specifically, and India generally. Overall the methods are sound but several steps need clarification. The discussion stretches the beyond the scope of the findings quite a bit. The authors attempt to contextualize their findings within a larger narrative of injection drug use, but offer quite a bit of personal opinion on the matter and use stigmatizing and negative language that is not appropriate. General comments The use of the terms ‘addicts’ and ‘addicted’ are outdated and not appropriate the journal’s audience. Individuals with an opioid use disorder is one alternative. “Smack” is not an appropriate term for heroin. Although this is a common street name, readers may interpret it differently. There are substantial typos and grammatical errors throughout; this paper cannot be typeset and published as it is. Highlights “Very high” may be misleading, as this study identified a lower HCV prevalence than was identified in the India-based meta-analysis the authors cited. “Effective and evidence-based care can be delivered…” is beyond the scope of this study’s findings. While this is the final recommendation the authors provide, this statement as a highlight should be tempered to align with the study findings. Introduction Lakh should probably be written as thousand for non-Indian readers. There is a claim that increasing opioid use is attributable to alcohol prohibition. This needs further explanation and a citation. The government is planning to distribute DAA starting in 2022. Is there more recent data available? Is there any information in the dataset about DAA receipt? This would definitely be a confounder and if not available should be included as a limitation. Methods Justify the time frame selected for the medical record extraction. Were previous years or more recent years available, and if so, why were 2014-2020 selected? Clarification on the final sample size is needed. Who was excluded? 25% were lost to follow up – how does this relate to the final analytic sample of n=213? The authors state that they did not adjust for drug type because there is no literature supporting its inclusion. The authors didn’t include justification from the literature to include the other variables, so it seems inconsistent. To that end, there certainly is literature around HCV and treatment (buprenorphine) and drug use (heroin and cannabis) which are drug types included in the data. In addition, alcohol has is strongly associated with HCV but is not included. Further explanation and justification for these analytic variable decisions is needed. Results The authors make several statements that are not supported by their findings, specifically regarding p-values. For example, stating that clients with HCV were older, but this is not supported by the proportions in Table 1 or by the p-values. This study identified no difference in HCV status by age. There needs to be a full description of all the variables included in the study and why. For example, Avil and Penta were not mentioned in the methods section but showed up in the results tables. Why are antihistamines included in the analysis? The results include that a higher number of deaths were observed among HCV clients. Death is not defined in the methods section. How was death defined? Death for any reason during the study period? In this case, death would be conceptualized as an outcome, as HCV infection would necessarily precede mortality. Either explain this sub-analysis and the justification for it better, or remove it. The patient status variable in Table 1 is confusing and was not described in the methods section. The term “on drugs” is ambiguous. Also, the inclusion of those who were lost to follow or migrated is difficult to follow. As a cross-sectional study there was no follow up. Are these categories mutually exclusive? Regardless of how you define ‘on drugs’, can a client be on drugs and migrate to another facility? This variable needs to be described in detail in the methods. The resolution of the figure images is very poor and not fit for publication. Provide these to the journal as vector graphics. The trend for age is not significant, but stated using language that suggests a trend was observed. The same for years of injection use. It is also unclear which model these trends were derived from, which should be clarified in the methods. Injection was significant in the full model, but it is not stated clearly where the estimates for the figures were derived from. The decision to conduct two separate models – restricted and full – needs more rationale and justification as to what one model tells us that the other cannot. But, it seems as if the authors only present the results from the full model anyway, so the purpose of the restricted is unknown. The variable selection criteria of p<0.10 from the univariable models needs a citation. Discussion Burden paragraph The authors state that patients in OST don’t represent true population of IDUs – why? This needs to be explained further and supported with citations. The authors state that OST and non-OST populations differ because the former is more responsible. This is not supported in the literature and is highly judgmental and stigmatizing and language that perpetuates clinical treatment disparities. This is an opinion and not appropriate for publication. The authors state that they can confidently say they underestimated HCV – why? How? Overestimating is also plausible, in that people with more severe disorders and higher HCV risk are the ones who get treatment. How the authors are conceptualizing underestimation, and how they use the epidemiologic and drug use literature to back it up, are needed. The statement “IDU live alone in poverty”, and several other similar statements in this paragraph, is not supported by the literature, which is likely the reason the authors offer no citations. Living alone and poverty are certainly determinants of drug use, but these characteristics do not universally describe the IDU population. History of crime is also not cited – again, this is stigmatizing language and projects a judgement from the authors. Poverty, exposure to the criminal justice system, and the resulting stress all drive drug use. The relationship between crime and drug is complex and requires considerable nuance, tact, and literature review to discuss appropriately Determinants paragraph The claim that higher HCV indicative of worsening HCV burden is misleading and not supported by the study findings. The study found a prevalence lower than the 44.7% cited by the authors (Goel et al.). In addition, as stated earlier, the time trend was not significant. A disproportionately high and growing HCV burden is the crux of the paper and in the title, but doesn’t align with the study findings. Public health paragraph The authors suggest that OST is an ideal opportunity to screen for HCV. This is a great point and much of the discussion would be substantially strengthened if this were described in greater detail. People who use and inject drugs are notoriously hard to reach in communities, and there are few places where effective screening may reach a large portion of the population. OSTs are one of the few places that provide that opportunity. Reviewer #2: Comments to Authors uploaded as a pdf file. The formatting of my comments is complicated and the text box does not alway all of the formatting to be visible. Therefore, I have chosen to attach a pdf file containing all the comments and suggested edits. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: George Pro Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 1 |
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PONE-D-22-32802R1The burden of Hepatitis-C virus infection among patients enrolled at the opioid substitution therapy center in Bihar: A cross-sectional studyPLOS ONE Dear Dr. Pandey, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jul 02 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Nickolas Zaller Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: No ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: No ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This revised version is substantially improved, the authors have responded to all of my original concerns. I do not have any further comments or critique. Reviewer #2: Items to attend to in Bihar HCV prev mss Introduction 1) I recommend changing the title to “Hepatitis C virus seroprevalence…” SInce about 30% of seropositive individual clear the virus, testing for antibodies does not accurately reflect the burden of infection but rather just evidence of past infection that could have become chronic. 2) Intro paragraph 1, comment on prompt treatment for HCV: No, prompt treatment is not necessary as time between infection and life-threatening manifestations of end-stage disease in measured in decades. 3) Paragraph 2 “Health care related procedures, injection drug use, and blood transfusions contribute to the spread of the HCV virus” delete “virus” 4) Revise “HCV transmission has reduced significantly through blood transfusion” to read, “HCV transmission through blood transfusion has been significantly reduced….” 5) Paragraph 3 text that reads “Traditionally, it has been seen that ~15% PWID have HIV/AIDS…” should be revised to read “Traditionally, it has been seen that ~15% of PWID has HIV/AIDS…” 6) Paragraph 4, last sentence currently reads, “…it is important to have a good quality epidemiological data with reasonable accuracy.” Revise to read, ““It is important to have reasonably accurate epidemiological data.” Material and Methods 1) Study population, 1st paragraph – text reads “Whenever a patient visits OST canter (to seek services)”, fix typo “canter”. 2) Study population, 1st paragraph – text reads “All patients at baseline also undergo for HIV, HBV antigen, and HCV antibody tests,” Revise the read “All patients at baseline also undergo testing to detect HIV, HBV antigen, and HCV antibody. Results 1) First paragraph – In the sentence, “The HCV seropositivity prevalence was 28% [95% CI: 22.7% - 33.8%)].” Delete the bracket at the end. 2) Generic and street drug names should not be capitalized in the text; okay to capitalize a row name in the tables. 3) Age is analyzed in two ways – as means via unpaired t-test and as a categorical variable. In the second paragraph of the Results, it appears that the analysis of age used the t-test. It would clarify things if this were indicated by a footnote in Table1. 4) Third paragraph – Although the test for trend is significant, there really is not rising prevalence. The sentence that read “There was a rising prevalence of HCV seropositivity with age (p-trend= 0.025).” should be deleted. The next sentence better describes the situation. Prevalence was lower in the two youngest age groups compared to the four older ones, which were quite similar. 5) Third paragraph – Fix typo in next sentence to read: Patients aged 25 years or less had..” 6) In the fourth paragraph, the 2nd and 3rd sentences are inconsistent with each other. Prevalence is higher in each group with more years of injecting compared to the group with fewer years — a monotonic increase in prevalence. The sentence about a sharp increase among those injecting >2 years suggests that thereafter prevalence did not increase much after that first increase after 2 years injecting, but this is not what that the data show. Delete the sentence about the sharp increase. 7) In the fifth paragraph, fix typo to read, “Patients with education up to higher…” 8) The last sentence in the fifth paragraph about the association of longer time injecting and HCV seropositivity should be moved to the previous paragraph discussing the association between years of injection and HCV seroprevalence Discussion 1) First paragraph – fifth sentence should be revised to read “We also found that those unemployed, less educated, and who were using injection drugs for longer period of time had a higher HCV seropositivity than their counterparts.” 2) Second paragraph – In the second sentence delete the mention of the confidence interval and the sentence can be rephrased to read “The observed HCV prevalence of 28% among OST patients in Bihar was significantly less than the 44.7% prevalence reported by Goel et al. in their systematic analysis of HCV in PWID across India.” 3) In suggesting reason for the lower prevalence, you should note that geographic differences may also play a role. 4) Second paragraph – Revise sentence to read “Nevertheless, our findings suggest that approximately 30% of patients….” 5) Second paragraph, last sentence – revise to read “Unfortunately, the available clinical records for the OST attendees in ICMR-RMRIMS do not provide any information about adverse exposures, prohibiting comparison with other studies.” 6) Public health significance – The first sentence is one very long run-on with five distinct parts. Each should be its own sentence. 7) Strengths and limitations -- A major limitation is the very small sample size. The clinic enrolled, on average, fewer than 30 patients every year. The barriers to entry — daily or near daily visits, active injection, failure of non-medication treatment for OUD — made for not only a small but potentially very biased sample. Conclusion 1) Delete “a” from the 3rd sentence “…where a comprehensive HCV care…” Figures 1) Both figures need to be revised. The current figures are not the correct way to present the data on HCV prevalence and age or years of injection, and the presentation actually complicates interpretation of the data. Since age and years of injection are presented as categorical variables, the HCV data should be represented by a bar with the confidence interval stretching above and below the bar. There is no way that prevalence and 95% CI should be shown as curves even if data were analyzed using Poisson regression. There is no need to present the data on the %age of study participants in each category (age and years of injection) as a bar; this information could be placed in text box above bar. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Hepatitis C virus seroprevalence among patients enrolled at the opioid substitution therapy center in Bihar: A cross-sectional study PONE-D-22-32802R2 Dear Dr. Pandey, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Nickolas Zaller Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-22-32802R2 Hepatitis C virus seroprevalence among patients enrolled at the opioid substitution therapy center in Bihar: A cross-sectional study Dear Dr. Pandey: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Nickolas Zaller Academic Editor PLOS ONE |
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