Peer Review History
| Original SubmissionMarch 9, 2023 |
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PONE-D-23-07065Functional characterization of Cinnamate 4-hydroxylase gene family in soybean (Glycine max)PLOS ONE Dear Dr. Dhaubhadel, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by May 27 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Thank you for stating the following in the Acknowledgments Section of your manuscript: "The authors thank Dr. Dae-Kyun Ro (University of Calgary) for pESC-Leu2d clone, Dr. Krzysztof Szczyglowski for L. japonicus RNA, and Jordan Vanderburt, Tim McDowell and Kuflom Kuflu for technical assistance. This research was supported by the Agriculture and Agri-Food Canada’s Genomics Research and Development Initiative grant (J-002364) and the ASC-09 Soybean Cluster Activity #7A (J-002060) to SD" We note that you have provided funding information that is not currently declared in your Funding Statement. However, funding information should not appear in the Acknowledgments section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: "This research was supported by the Agriculture and Agri-Food Canada’s Genomics Research and Development Initiative grant (J-002364) and the ASC-09 Soybean Cluster Activity #7A (J-002060) to SD." Please include your amended statements within your cover letter; we will change the online submission form on your behalf Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. Additional Editor Comments (if provided): Dear collegues I have received the reports from 2 experts in this field. As you can see it needs revisions before final acceptance. Please answer the comments and sent back the revised version. Please also recheck the English by a native person. Regards [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: N/A ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: “Functional characterization of Cinnamate 4-hydroxylase gene family in soybean (Glycine max)” is a massive piece of work and it has provided good information. I thank the authors for this work. The introduction provides comprehensive informations on the background. The research was properly planned and performed. Methods and results are well described. I recommend this manuscript for publication. Reviewer #2: Khatri et. al characterized the soybean C4H genes and confirmed cinnamate hydroxylation activity by enzymatic assay with heterologously expressed protein. The authors also provided a cloning strategy for the coexpression of a plant CPR with P450 for future functional study. The authors claimed they have identified the C4H genes across the manuscript, which have already been reported previously. They should take less credits on that or just claim the locus ID following reannotated of soybean genome was updated. Line 275&line 365 The docking was done for GmC4H10 and the authors reported docking energy. Thus, instead of saying “not observed”, it is better to claim the docking position is impossible for hydroxylation. Line 308 Specifically, only class II P450 requires CPR. Line 322 It could be fairer to compare the catalytic efficiency (Vmax/Km). The full kinetic assay (Michaelis–Menten fitting) with three C4Hs is more informative than figure 7, and figure 7 can be moved to supplementary figure. Line 392 Has the catalytic efficiency been compared to that with soybean CPR? Line 387 There is an underlined o in coumaric acid. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Functional characterization of Cinnamate 4-hydroxylase gene family in soybean (Glycine max) PONE-D-23-07065R1 Dear Dr. Dhaubhadel, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Mojtaba Kordrostami, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Dear authors, I am pleased to inform you that your manuscript titled "Functional characterization of Cinnamate 4-hydroxylase gene family in soybean (Glycine max)" has been accepted for publication in PLOS One. Your study provides valuable insights into the functional characterization of the Cinnamate 4-hydroxylase gene family in soybean, which will undoubtedly contribute to our understanding of soybean genetics and ultimately benefit the agricultural industry. We appreciate your contribution to our journal and look forward to publishing your article. Thank you for choosing PLOS One as the platform for sharing your research. Best regards, Reviewers' comments: |
| Formally Accepted |
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PONE-D-23-07065R1 Functional characterization of Cinnamate 4-hydroxylase gene family in soybean (Glycine max) Dear Dr. Dhaubhadel: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Mojtaba Kordrostami Academic Editor PLOS ONE |
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