Peer Review History
| Original SubmissionDecember 24, 2022 |
|---|
|
PONE-D-22-35269On the fractal patterns of language structuresPLOS ONE Dear Dr. RIBEIRO, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== ACADEMIC EDITOR: The topic of the paper is very intriguing and makes a significant contribution to the study of languages. The authors should perhaps make more explicit than they already do how they used the CoNLL 2017 Corpora data (limited to selected languages) to respond to the first reviewer's comments. ============================== Please submit your revised manuscript by Mar 31 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Ramona Bongelli, Ph.D. Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please note that PLOS ONE has specific guidelines on code sharing for submissions in which author-generated code underpins the findings in the manuscript. In these cases, all author-generated code must be made available without restrictions upon publication of the work. Please review our guidelines at https://journals.plos.org/plosone/s/materials-and-software-sharing#loc-sharing-code and ensure that your code is shared in a way that follows best practice and facilitates reproducibility and reuse. 3. We note that the grant information you provided in the ‘Funding Information’ and ‘Financial Disclosure’ sections do not match. When you resubmit, please ensure that you provide the correct grant numbers for the awards you received for your study in the ‘Funding Information’ section. 4. We note that you have stated that you will provide repository information for your data at acceptance. Should your manuscript be accepted for publication, we will hold it until you provide the relevant accession numbers or DOIs necessary to access your data. If you wish to make changes to your Data Availability statement, please describe these changes in your cover letter and we will update your Data Availability statement to reflect the information you provide. 5. Please ensure that you refer to Figures 2 and 3 in your text as, if accepted, production will need this reference to link the reader to the figure. 6. Thank you for stating the following in the Acknowledgments Section of your manuscript: "This work was supported in part by the Brazilian agencies CNPq (307633/2019-5 and 312020/2021-0)." We note that you have provided funding information that is not currently declared in your Funding Statement. However, funding information should not appear in the Acknowledgments section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: "The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript." Please provide an amended statement that declares *all* the funding or sources of support (whether external or internal to your organization) received during this study, as detailed online in our guide for authors at http://journals.plos.org/plosone/s/submit-now. Please also include the statement “There was no additional external funding received for this study.” in your updated Funding Statement. Please include your amended statements within your cover letter; we will change the online submission form on your behalf. 7. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. Additional Editor Comments: The topic of the paper is very intriguing and makes a significant contribution to the study of languages. The authors should perhaps make more explicit than they already do how they used the CoNLL 2017 Corpora data (limited to selected languages) to respond to the first reviewer's comments. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: No Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: I Don't Know Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: No Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: I have to ask the authors to revise and resubmit their contribution. The reason is not that the article's findings are problematic (this is something I have not been able to assess yet) but that I cannot evaluate the manuscript at this stage, since the authors do NOT provide all the necessary data and code that one would need in order to replicate their results. Even if their study involves HPC computing, it is necessary that data AND code are shared already during the review stage with the reviewers and later -- in case of acceptance -- with the readers. The current MS claims to share data, but in the paper, I do not find a single link to their supplementary material, so I could not check the code for its suitability. I will gladly provide a more thorough review of this study which may be potentially interesting, but only when data and code are present and allow me to inspect them thoroughly. This includes the code that was used to create the figures. I recommend the authors to read the following two blog posts which will provide some guidance in how data and code can be shared when sending one's study to a scientific journal: * https://calc.hypotheses.org/2782 * https://calc.hypotheses.org/2877 Reviewer #2: Things that need to be addressed as minor revisions: Line #38: You mention phylogenetic methods, but I think a brief mention of what that means would be relevant here, particularly to help orient unfamiliar readers. Line #66: I’d be interested in knowing what a ‘filament’ is. Line #74: “discussed” should be “discuss” Line #76: should it be: “the mathematical treatment of language”? Line #104: Here you mention ‘long-range correlations’ for the first time, but you do not define what that means. This is important because you rely on this term (and on its opposite, short-range correlations) in the discussion of your findings. Line #104: “can not be represented by a random walk” – I’m not sure what you mean here. Lines #113-115: “The distribution of languages, their diversity and geographical coverage also present power-law behavior” • I am not familiar with this. How is geographical coverage, for instance, governed by power laws? Line #123: The Hurst exponent—you need to briefly mention what this is/does. Lines #125-126: “This exponent is different from 0.5, which denotes that there are structures with long-range correlations.” Without further explanation of (a) what the exponent means, and (b) what long-range correlations are, this sentence does not make sense to the reader. Line #203: “whose its elements” – remove ‘its’ Line #337: “We can see some groups of languages that spontaneously form in the space.” I’m not sure what you mean by ‘spontaneously form.’ Do you mean that have a tendency to cluster in Fig. 7? Lines #370-372: “Therefore, for most of the languages we investigate, their natural evolution does not significantly alter their broader structures, indicating that they remain near their same-root languages in the longer-scale fractal dimension.” This is a very interesting claim, but I still wish that the concepts of shorter-scale and longer-scale fractal dimensions were more clearly discussed. That would help me better understand this idea. Line #415: “For the few exceptions mentioned above…” Can you reiterate what those exceptions are here as a reminder? Additional Comments 1. “Word embedding” is given as a keyword, but not discussed within the paper 2. Final paragraph of the introduction: It’s important that you start to discuss what you plan to do in this study, but some of this discussion is unclear. For example: a. In lines #71 & 72, you write “we applied an algorithm developed in the last decade.” I immediately ask myself what the purpose/function of this algorithm is and where it came from. b. Then you state that “we applied the tools of fractal geometry to observe similarities and differences among the many languages.” It’s not clear, however, how drawing on fractal geometry will allow you to observe these similarities and differences. 3. In the final paragraphs of your conclusion, you make some interesting claims related to the similarities in development of languages with similar/different roots. I’m happy to have learned this, but now I want to know why? What could be the motivator of this type of development? Is that discussed in the literature at all? What claims can you make? ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Johann-Mattis List Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
|
On the fractal patterns of language structures PONE-D-22-35269R1 Dear Dr. RIBEIRO, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Ramona Bongelli, Ph.D. Academic Editor PLOS ONE |
| Formally Accepted |
|
PONE-D-22-35269R1 On the fractal patterns of language structures Dear Dr. RIBEIRO: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Professor Ramona Bongelli Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .