Peer Review History
| Original SubmissionDecember 2, 2022 |
|---|
|
PONE-D-22-33136A novel task to investigate vibrotactile detection in micePLOS ONE Dear Dr. Olcese, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.
Two experts in the field have carefully reviewed the manuscript entitled, "A novel task to investigate vibrotactile detection in mice". Their comments are appended below. Both reviewers are positive for publication with leaving several critical concerns which should be considered before publication.
This Academic Editor suggests to revise the manuscript according to the critiques. I will make the decision after receipt of your replies to each comments and necessary revision. Please submit your revised manuscript by Mar 12 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Manabu Sakakibara, Ph.D. Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf 2. Thank you for stating in your Funding Statement: "This study was supported by this work was supported by the European Union’s Horizon 2020 Framework Program for Research and Innovation under the Specific Grant Agreement 785907 (Human Brain Project SGA2) and 945539 (Human Brain Project SGA3) to CAB, UO and CMAP, by the FLAG-ERA JTC 2019 project DOMINO (co-financed by NWO) to CAB and UO, and by an Amsterdam Neuroscience Proof of Concept grant to UO." Please provide an amended statement that declares *all* the funding or sources of support (whether external or internal to your organization) received during this study, as detailed online in our guide for authors at http://journals.plos.org/plosone/s/submit-now. Please also include the statement “There was no additional external funding received for this study.” in your updated Funding Statement. Please include your amended Funding Statement within your cover letter. We will change the online submission form on your behalf. 3. PLOS requires an ORCID iD for the corresponding author in Editorial Manager on papers submitted after December 6th, 2016. Please ensure that you have an ORCID iD and that it is validated in Editorial Manager. To do this, go to ‘Update my Information’ (in the upper left-hand corner of the main menu), and click on the Fetch/Validate link next to the ORCID field. This will take you to the ORCID site and allow you to create a new iD or authenticate a pre-existing iD in Editorial Manager. Please see the following video for instructions on linking an ORCID iD to your Editorial Manager account: https://www.youtube.com/watch?v=_xcclfuvtxQ 4. We note that you have included the phrase “data not shown” in your manuscript. Unfortunately, this does not meet our data sharing requirements. PLOS does not permit references to inaccessible data. We require that authors provide all relevant data within the paper, Supporting Information files, or in an acceptable, public repository. Please add a citation to support this phrase or upload the data that corresponds with these findings to a stable repository (such as Figshare or Dryad) and provide and URLs, DOIs, or accession numbers that may be used to access these data. Or, if the data are not a core part of the research being presented in your study, we ask that you remove the phrase that refers to these data. 5. Please include your full ethics statement in the ‘Methods’ section of your manuscript file. In your statement, please include the full name of the IRB or ethics committee who approved or waived your study, as well as whether or not you obtained informed written or verbal consent. If consent was waived for your study, please include this information in your statement as well. 6. We note that Figure 1 in your submission contain copyrighted images. All PLOS content is published under the Creative Commons Attribution License (CC BY 4.0), which means that the manuscript, images, and Supporting Information files will be freely available online, and any third party is permitted to access, download, copy, distribute, and use these materials in any way, even commercially, with proper attribution. For more information, see our copyright guidelines: http://journals.plos.org/plosone/s/licenses-and-copyright. We require you to either (1) present written permission from the copyright holder to publish these figures specifically under the CC BY 4.0 license, or (2) remove the figures from your submission: a. You may seek permission from the original copyright holder of Figure 1 to publish the content specifically under the CC BY 4.0 license. We recommend that you contact the original copyright holder with the Content Permission Form (http://journals.plos.org/plosone/s/file?id=7c09/content-permission-form.pdf) and the following text: “I request permission for the open-access journal PLOS ONE to publish XXX under the Creative Commons Attribution License (CCAL) CC BY 4.0 (http://creativecommons.org/licenses/by/4.0/). Please be aware that this license allows unrestricted use and distribution, even commercially, by third parties. Please reply and provide explicit written permission to publish XXX under a CC BY license and complete the attached form.” Please upload the completed Content Permission Form or other proof of granted permissions as an ""Other"" file with your submission. In the figure caption of the copyrighted figure, please include the following text: “Reprinted from [ref] under a CC BY license, with permission from [name of publisher], original copyright [original copyright year].” b. If you are unable to obtain permission from the original copyright holder to publish these figures under the CC BY 4.0 license or if the copyright holder’s requirements are incompatible with the CC BY 4.0 license, please either i) remove the figure or ii) supply a replacement figure that complies with the CC BY 4.0 license. Please check copyright information on all replacement figures and update the figure caption with source information. If applicable, please specify in the figure caption text when a figure is similar but not identical to the original image and is therefore for illustrative purposes only. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: In this manuscript, Muller and colleagues propose a go-no go task based on vibrotactile stimuli on mice. I think the protocol is well thought out and designed and could be used to infer the neuronal mechanism of somatosensation. In the introduction section, the authors propose their protocol as a better alternative to the study of somatosensation compared to studies involving whiskers. I think this approach simply represents an alternative, not necessarily the best. Much of the sensory cortex of mice is barrel-dominated. Moreover, a strong specificity between individual whiskers and groups of neurons responding to stimulation is present. This makes it possible to specifically analyse groups of neurons that respond to the stimulation of a single whisker. I think this is a flaw in form rather than content. Indeed, in the discussion session the authors are more cautious in describing the translational potential of their protocol. I understand that the authors need to show their work in an appealing light, but I would suggest that the authors rewrite the introduction giving credit to previous studies that analysed sensory responses from whiskers and propose their method as an alternative, which is equally valid. The main point of clarification for me is the use of PV-Cre mice for this study. The authors should thoroughly clarify why they used this model in spite of a non-transgenic line. There is evidence in the literature, albeit conflicting, showing that being PV expressed in sperm, it is possible that an unintended percentage of germline or global recombination may occur. This is particularly true for Pvalb-2A-Cre (PMID: 24137112). Neurons expressing parvalbumin are crucial for the correct processing of sensory stimuli in the cortex, and it is also present in the peripheral nervous system, e.g., in the dorsal root ganglia (DRG). I ask the authors to clarify why they used this model and to specify whether their Pvalb-Cre model is Pvalb-IRES-Cre (Hippenmeyer et al., 2005) or Pvalb-2A-Cre (Madisen et al., 2010). If it is the former, this could be a major concern for the results and implications of this study. Minor points: I would add a photo of the experimental setup, this could help, more than the diagram, to replicate the work. This could help in understanding how the vibrating motor was applied. Please, specify the frequency of vibration stimuli applied in each of the stages. The figures of the manuscript appear of a low quality, please check and revise accordingly. Reviewer #2: In this study, the authors develop a new behavioral paradigm wherein mice detect tactile sensory stimuli to get reward. They find that mice learn the task in two months of training and report fine details of their training processes. This task will be a good addition to the field working on sensorimotor transformation and allow future investigations to test how similar/dissimilar underlying circuitries are between different sensory modalities. Also, the manuscript is clearly written. I only have one major comment and quite a few minor points need to be addressed. Major 1) The authors argue that mice are not using auditory stimulus to make decisions by introducing the control vibration stimulus. However, it is still possible that mice use sounds at least in part in the current task design that lacks some control experiments. First, given that the control vibration is given in both Go and No-Go trials, mice could discriminate the sound volume between the two trial types unless the control vibration have several different intensities in both trial types. Second, mice might discriminate the location and/or the number of the sound sources. If mice use auditory information, the current task design would be very confusing for mice since identical sound (i.e. the control stimulation) gives reward at 50% probability. Possibly this is one of the reasons why it takes too long for mice to get this very simple sensory detection task, which usually takes only a few days in other modalities. The authors mention that the two sound sources are close with each other, but no details are provided (e.g. how much degrees are they separated in relation to the left ear? How much spatial resolution does the mouse auditory system have?). One easy solution could be swapping or randomizing the sound locations within a session. This should be discussed as a potential caveat. Minor General comments 2) Another concern is if mice are using ‘specific’ sensory information as the authors aimed for or mice just have high arousal in response to vibration stimulus which can trigger higher lick probability. Adding pupil dilation data would be highly recommended if they have. Otherwise, this should be discussed. 3) Since simple visual detection task doesn’t require the primary visual cortex in mice (e.g. Resulaj et al., 2018), it is possible that this task doesn’t involve S1. In this regard, it would be informative if the authors mention how similar/dissimilar the subcortical circuitries are between mice and humans as well. 4) As mentioned above, the task takes surprisingly long time, but not “with reasonably short training times” at all. The authors should discuss why it takes long or how it can be shortened. This kind of information would be useful for the field. Specific comments 5) Why are PV-Cre lines used? 6) Add references to line 48 and 76. 7) line 99: 3% 'for' induction and 1.5% 'for' maintenance. The manuscript is overall well written but there are several incorrect English in grammar. Authors should go through the manuscript more carefully. 8) I doubt if the mouse in Figure 1B really got the task since there are significant amount of licking prior to sensory stimuli – in several trials, the lick rate looks over 10 Hz. The author should be aware that the major increase in licking rate in response to stimulus comes mainly from consumption of the reward. My concern here is that this mouse is just making spontaneous licking which triggers valve opening if it happens in the right timings. Supporting this, the licking does not seem to be well time-locked relative to stimulus onset. The data should be replaced with that of expert mouse. The current one is just confusing. 9) The authors provide fine details of procedures in each training stage. It would be nicer if they explain the rationales or aims of each stage more explicitly. 10) Line 198: Can the performance really be assessed by how much milk was consumed given that reward was given automatically in this stage? I guess reaction time would be a better measure here. 11) Why it takes 13 days in the first stage even though it just gives automatic rewards? Better to describe a bit more about mouse behavior. Are mice just freaked out in the setup? 12) How can 5-20 sec of ITI have an exponential distribution? I suspect they set cut-off values on both upper and lower ends but cannot find any information. What is the lambda? Does it still have flat hazard rate after thresholding? 13) Line 231: What is the rationale of taking 1 sec window? Given that stimulation is given for 2 sec, shouldn’t it be 2 sec? 14) Line 232: D-prime is not defined yet in the manuscript. Also, I don’t see the point of calculating D-prime without FA rate. Better to use different measures or define it with a different equation in the same paragraph. Also, Figure 2D is almost meaningless in the current way since different measures are used in the same graph. 15) Figure 2C should show all four mice. 16) Line 261. If Hit and FA rates are rounded to 1, how can the normal inverse cumulative distribution function be calculated? People do the other way around (see Stanislaw & Todorov, 1999). 17) Using different words for the same thing is very confusing. Probe trials vs No-Go trials; and control vibration vs null stimulus. Use only one of them. 18) In Figure 3A, why does the mouse show more spontaneous licking prior to stimulus onset in No-Go trials than Go trials? Are Go and No-Go trials randomly given? Or did you put any bias depending on performance in the previous trials? 19) Figure 4A: how can d-prime calculated for Null? This is very confusing if you use the equation in line 259. 20) Figure 4C: how can Hits be counted for Null? Y-axis should be corrected accordingly. Also, what does “E.g” stand for? 21) Figure 4F and 4G: Just show hit and FA rates, which describe mouse behavior better. Current measures in F and G are values obtained after curve fitting on small number of data points, which has less meaning. It is hard to get how the values in 4e were calculated from the manuscript, but the same logic can be true for 4E since the steepness of curves would be very different from the reality, depending on where each mouse put its threshold. 22) Figure 5A: this figure panel has almost no information. Again, the lick rate in Go trials mainly represent how vigorously mice are licking a spout during reward consumption. Also, how lick rate is calculated is unclear. Is it coming from only hit trials? Only during the 1 sec of stimulation period was considered (if so, it is redundant to 5B)? Reaction time (5B) is enough here and lick rate is just confusing. 23) Figure 5B: show non-significant comparisons as well (in a similar way as 5A). 24) line 112: what does PVC stand for? ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
|
A novel task to investigate vibrotactile detection in mice PONE-D-22-33136R1 Dear Dr. Olcese, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Manabu Sakakibara, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: (No Response) Reviewer #2: (No Response) ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** |
| Formally Accepted |
|
PONE-D-22-33136R1 A novel task to investigate vibrotactile detection in mice Dear Dr. Olcese: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Manabu Sakakibara Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .