Peer Review History
| Original SubmissionNovember 14, 2022 |
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PONE-D-22-31340Matrix vesicles promote bone repair after a femoral bone defect in mice.PLOS ONE Dear Dr. Kaji, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by 12/20/2022. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Isha Mutreja Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. PLOS ONE now requires that authors provide the original uncropped and unadjusted images underlying all blot or gel results reported in a submission’s figures or Supporting Information files. This policy and the journal’s other requirements for blot/gel reporting and figure preparation are described in detail at https://journals.plos.org/plosone/s/figures#loc-blot-and-gel-reporting-requirements and https://journals.plos.org/plosone/s/figures#loc-preparing-figures-from-image-files. When you submit your revised manuscript, please ensure that your figures adhere fully to these guidelines and provide the original underlying images for all blot or gel data reported in your submission. See the following link for instructions on providing the original image data: https://journals.plos.org/plosone/s/figures#loc-original-images-for-blots-and-gels.
In your cover letter, please note whether your blot/gel image data are in Supporting Information or posted at a public data repository, provide the repository URL if relevant, and provide specific details as to which raw blot/gel images, if any, are not available. Email us at plosone@plos.org if you have any questions. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: No Reviewer #2: Partly Reviewer #3: No ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: I Don't Know ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: No Reviewer #2: No Reviewer #3: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Overall Consideration: In the manuscript, “Matrix vesicles promote bone repair after a femoral bone defect in mice”, the authors utilize evaluate the effects of osteoblast-derived collagenase-released extracellular vesicles on cortical bone regeneration. The author utilized microCT and histology to assess bone healing within this model. This in vivo experiment in couple with in vitro analyses of osteoblast differentiation and mineralization to define mechanism. The authors argue that CREVs enhance healing within this model by increasing chondrogenesis that facilitates bone regeneration (e.g., endochondral ossification). This is an important topic of study, but there are some significant limitations. Overall, the depth and rigor of the study represent the largest weaknesses. A point-by-point review is listed below: Major comments: 1. Most of the study is observational, and the bit of mechanistic data presented by the authors are negative data. 2. The voxel size (25 microns) utilized in the microCT scanning is large and may be adding artifact to the authors' analyses. Moreover, this limits the ability of the authors to collect microarchitectural data that may point to mechanism(s). 3. Did the authors euthanize mice prior to collection of the femora for analyses? 4. Can the authors demonstrate retainment of the applied scaffold applied within the defect following surgery? 5. Bone healing is a dynamic process. In the model, the authors are using it takes upwards of month for the defect to heal fully, so the day 7-time point the authors chose may not reflect the entire bone healing process. The authors need to discuss this and other limitations of the study. 6. The cortical bone defect model is supposed to be a model of intramembranous bone regeneration and we would not expect cartilage to form within this model. The authors observe some areas of metachromatic toluidine blue staining, and conclude that cartilage is forming within the defect. Toluidine blue can also stain osteoid in this manner. The authors should perform safranin O / fast green staining or some other more specific method to detect cartilage formation within the defect to substantiate further this claim. 7. Standardized bone histomorphometry (e.g., osteoblasts per bone surface, osteoclasts per bone surface) would also help the authors assess the increased healing observed within their model. 8. The periosteal reaction looks greater in the CREV treated group given the images provided. Can the authors quantify this? This may offer a clue to additional mechanism(s) for the authors. 9. The in vitro data supplied show that CREVs do not enhance osteoblast differentiation in vitro, so the authors conclude that enhanced chondrogenesis must be occurring. There are other explanations for their observations (e.g., altered osteoclastogenesis, increased progenitor recruitment from the periosteum, etc.). Direct data showing that CREVs enhance chondrogenesis and/or chondrocyte maturation (or some other mechanism) are needed to support claims made by the authors. Minor Comments: 1. The grammar issues within the manuscript need to be addressed. Reviewer #2: The authors present an interesting article characterizing collagenase-digested EVs and the use of these in a femoral defect model and the impact of these on osteogenesis in vitro. Some claims of the EV identification are debatable, some methodology is missing/unclear, and in vitro assessments should more closely match in vivo application of CREVs in a hydrogel. The following major revisions are requested: Introduction: 1. The introduction is lacking detail about the specific bone defect the authors are addressing. The authors claim that a bone defect is generally repaired without clinical intervention and later mention that clinical intervention is needed in some instances of critical-sized defect repair. Authors should re-structure their introduction to bone repair with the focus of femoral defect repair, such as current methods and needs for new approaches, and limitations of current approaches for this specific repair problem. Methods: 2. Collagenase usage is listed as Units/mL. Define these arbitrary ‘units’. 3. ALP activity is missing methods. Based on figures, it seems this assay was performed on the CREV. Add details explaining what samples were used and how much of these samples were used in this assay. 4. Authors utilize a gelatin hydrogel to deliver CREV to the bone defect site; however, there is no methodology on these hydrogels. Authors need to include information on methods of gelatin hydrogel production, characteristics of hydrogels (porosity, mechanics, etc.), and release characteristics of encapsulated EVs. If this is already published work, then this should be added to the introduction explaining these findings. 5. What was the dosing of CREV used in the mineralization assay? Add this to the methods section. 6. Cell isolation- how were osteoblast cells verified for correct cell isolation? Information on cell line manufacturer for ST2 cells is also needed. Discussion 7. Authors seem to be claiming that CREVs may be secreted in an exosome-like fashion, but in order to claim this, authors must provide more supporting information than CD9+ and similar size range. This sentence could be removed instead. 8. Authors use CREVs and MtEVs interchangeably but note that CREVs may contain exosome-like EVs and MtEVs, but later claim MtEVs induce bone repair based on CREV results. Authors should clarify the identification of their EVs (likely MtEVs) and use this consistently within the manuscript. For clarity, authors should consider only using MtEVs as an acronym for their EV used in this study. 9. Authors assess osteogenesis in a 2D model in vitro but to more accurately represent in vivo work, authors should examine the response of osteogenic cells seeded on hydrogels containing CREVs. 10. There was a lack of mineralization differences in vitro and authors suggest CREVs could work through a different mechanism. Authors should consider examining cell activity in response to CREVs and protein release of those related to osteoclastogenesis and inflammation (OPG, IL6, etc.), especially from mesenchymal stem cells, as this may prove interesting mechanistic results of CREVs. Reviewer #3: This study by Mizakumi et al. isolates vesicles from mouse osteoblast cultures. Vesicles were used to treat a femoral defect and osteoblast cultures. There are several major concerns with experimental design and methods of the study that make it difficult to interpret the results. 1. There is no indication of the sex or age of the mice used in the femoral defect model experiment. No power analysis is included to indicate how number of animals used was determined. 2. ALP cells in Fig 3 should be quantitated per number of DAPI number of cells. 3. Sections stained with toluidine blue to indicate areas of cartilage should instead be stained with safranin O. 4. ST2 cells are an inappropriate cell to use for in vitro studies. Primary mesenchymal stem cells should be used to treat with the vesicles. No indication why the concentration of vesicles was used. 5. No indication as to why the time point of 7 days was chosen as the end point. Minor Point 1. Graphs should show individual data points of each mouse in Fig 2. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Marley J. Dewey Reviewer #3: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 1 |
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PONE-D-22-31340R1Matrix vesicles promote bone repair after a femoral bone defect in mice.PLOS ONE Dear Dr. Kaji, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Mar 13 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Isha Mutreja Academic Editor PLOS ONE [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: (No Response) Reviewer #2: (No Response) Reviewer #3: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: No Reviewer #2: Yes Reviewer #3: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: No Reviewer #3: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors address some of the comments within their revised manuscript, but there is still a disconnect between the in vivo observations and the in vitro work done to explain those data. There periosteal reaction with the CREV treatment in enormously different, but that is not explored whatsoever. Reviewer #2: The original comment about the gelatin hydrogels was not fully addressed. Authors have partially answered this comment, but must add some greater detail to the fabrication process of these hydrogels in the methods section to ensure reproducibility. Briefly list fabrication process including how CREVs were encapsulated within the hydrogel into the methods section with references on prior use of these hydrogels. Reviewer #3: The authors have addressed all my comments to my satisfaction. However, if they can address the comments made by other reviewers, it will improve the scientific merit of the manuscript. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Marley Dewey Reviewer #3: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Matrix vesicles promote bone repair after a femoral bone defect in mice. PONE-D-22-31340R2 Dear Dr. Kaji, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Isha Mutreja Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors have revised this manuscript sufficiently. Thank you for the additional edits to this manuscript. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No ********** |
| Formally Accepted |
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PONE-D-22-31340R2 Matrix vesicles promote bone repair after a femoral bone defect in mice. Dear Dr. Kaji: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Isha Mutreja Academic Editor PLOS ONE |
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