Peer Review History
| Original SubmissionNovember 10, 2022 |
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PONE-D-22-31074Essential components of a definition for early antibiotic treatment failure: a scoping review.PLOS ONE Dear Dr. Hiroyoshi Iwata, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by 2 March 2023. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Kind regards, Ali Amanati Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Thank you for stating the following financial disclosure: "No" At this time, please address the following queries: a) Please clarify the sources of funding (financial or material support) for your study. List the grants or organizations that supported your study, including funding received from your institution. b) State what role the funders took in the study. If the funders had no role in your study, please state: “The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.” c) If any authors received a salary from any of your funders, please state which authors and which funders. d) If you did not receive any funding for this study, please state: “The authors received no specific funding for this work.” Please include your amended statements within your cover letter; we will change the online submission form on your behalf. Additional Editor Comments (if provided): Dear authors Your manuscript [ID Number PONE-D-22-31074] has passed through the review stage and is ready for revision. Editorial comments To ensure the Editor and Reviewers can recommend that your revised manuscript is accepted, please pay careful attention to each of the comments posted underneath this email. This way we can avoid future rounds of clarifications and revisions, moving swiftly to a decision. 1. Please provide a point-by-point response to the the Editor and reviewer's comments 2. Please highlight all the amends on your manuscript with yellow colour 3. Minor English language correction is needed Other shortcomings First of all, early antibiotics treatment response could be interpreted only according to the local antibiotic resistance pattern and the geographical area of the conducted studies. Therefore, the findings of studies obtained in areas with low levels of resistance cannot be generalized for other areas with high levels of resistance (lack of external validity). This was expected to be included in the discussion. Second, due to the improvement of rapid diagnostic methods in bacterial infections, such as the use of rapid detection methods for multi-resistant bacteria in blood cultures, these definitions can be different based on Gram-negative (especially multi-drug resistant Gram-negative) and Gram-positive organisms. Tthird, bacterial infections are also divided based on the bacterial inoculum size and therefore should be considered in the early antibiotic’s treatment failure definition. While urinary tract infections have a low bacterial inoculum size, pneumonia and sepsis have a high bacterial inoculum size, and thus the response to treatment may be different. Overall, for serious bacterial infections more stringent definitions should be considered; however, for milder infections, more flexible definitions may be acceptable. There is no discussion in this regard in the manuscript and it is recommended to improve the discussion section accordingly. Also, if possible, a table can be prepared (based on the definitions of bacterial inoculum size) for more precise comparison. Although the findings of this study could be helpful there are many shortcomings in the definition, which will make it difficult to reach an accurate definition based on the wide variety of bacterial infections. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: N/A Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Congratulations on the paper. The subject is exciting, and a lot of work to make this review is apparent. Significant revisions/clarifications: - Elaborate further about the potential uses of EATF. However, this is not the purpose of the review; discussing the possible uses would be helpful for readers to integrate the concept into their work. Also, clarifying the potential uses even has implications for the components of the definition. For example, the use of EATF as an outcome for RCTs for new antibiotics has essential differences when compared with the use for clinical or antimicrobial stewardship purposes. For the second, component mortality would be of little help. - From an antimicrobial stewardship point of view, using EATF raises some concerns that should be addressed. For example, analyzing together studies that report infections that need source control and those that typically do not need may create a concept (EATF) that promotes antibiotic escalation when the problem is source control. The authors should separate their findings for infections that typically do not need source control, such as respiratory tract infections and those that usually need source control. - Elaborate further about future steps to develop this interesting EATF concept and how it can be studied and used in future. Would the authors suggest some consensus procedure to define the concept? Delphi, for example? Minor revision: - Page 21, line 223: mortality is misspelt. Reviewer #2: The manuscript by Hiroyoshi Iwata et al. answers an important definitional question on "Early antibiotics treatment failure" by a systematic review of the literature. This manuscript is well-written and describes a well-conducted systematic review but deserves rare and formative revisions before possible acceptance for publication. Italicize "et al." and names of bacteria Prefer passive forms. Why didn't the authors use EMBASE? Numbers less than or equal to 12 should be spelled out if appropriate. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-22-31074R1Essential components of a definition for early antibiotic treatment failure: a scoping review.PLOS ONE Dear Dr. Hiroyoshi Iwata, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Apr 20 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Ali Amanati Academic Editor PLOS ONE Additional Editor Comments: Dear authors The manuscript's overall presentation improved after amendments and is now more readable. I thank the authors for their very detailed replies to my comments. Minor correction is needed: Line 267: add "(inoculum effect)" after "bacterial count". "Future studies may evaluate the importance of bacterial count (inoculum effect) and its ..." While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Essential components of a definition for early antibiotic treatment failure: a scoping review. PONE-D-22-31074R2 Dear Hiroyoshi Iwata, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Ali Amanati Academic Editor PLOS ONE Additional Editor Comments (optional): I read the revised manuscript I have no further comments to add. I thank the authors for their very detailed replies to my comments. Reviewers' comments: |
| Formally Accepted |
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PONE-D-22-31074R2 Essential components of a definition for early antibiotic treatment failure: a scoping review. Dear Dr. Iwata: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Professor Ali Amanati Academic Editor PLOS ONE |
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