Peer Review History
| Original SubmissionNovember 1, 2022 |
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PONE-D-22-30114Clinical characteristics and diagnosis of intestinal tuberculosis in clinical practice at Thailand’s largest national tertiary referral center: An 11-year retrospective reviewPLOS ONE Dear Dr. Limsrivilai, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jan 05 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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We will update your Data Availability statement to reflect the information you provide in your cover letter. 3. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: No Reviewer #2: Yes Reviewer #3: No ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: No Reviewer #2: I Don't Know Reviewer #3: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes Reviewer #3: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: 1. Why were patients with perforation of tuberculous intestinal ulcers and intestinal obstruction included in the study? 2. How many patients with pulmonary tuberculosis were found to have MBT in sputum? 3. What was the level of CD-lymphocytes in patients with HIV infection? How many of them received antiretroviral therapy? 4. Figure 1C does not respond to intestinal tuberculosis. More consistent with Crohn's disease. What phase of the statement is shown in the figure? 5. The statement that abdominal lymphadenopathy in patients amounted to 611.3% (61,3% mistake in main document) is questionable. 6. In table 2, the sensitivity is calculated incorrectly. These are just descriptive statistics. Reviewer #2: The authors report a single institution retrospective review of clinical characteristics and diagnostic methods of intestinal tuberculosis (ITB) in Thailand over 11 years. The length of the manuscript is a bit long. The authors should consider condensing the manuscript to best highlight important findings such as the increase in sensitivity when diagnostic tests were used in combination, the benefit of repeat colonoscopy, and the role of stool tests in the diagnosis of ITB. Numerous grammatical errors in the text should be corrected (suggestions may be found in the reviewed manuscript via tracked changes). Overall, the manuscript had been prepared according to the STROBE checklist except for several items not mentioned in the manuscript: 1) Explanation of how missing data were addressed 2) Reasons why certain tests were not done in all patients 3) Number of missing data for each variable Below are a few additional revisions that the authors may consider: 1) Abstract: Include all main findings of significance in the conclusion like the increase in sensitivity when diagnostic tests were used in combination and the benefit of repeat colonoscopy for diagnosis. 2) Statistical analysis: Only include statistical analysis that was done. Comparisons of variables with T-test or Chi-square were not seen in results but mentioned, please clarify. The paired T-test should be done instead of McNemar’s test to compare sensitivities as sensitivities are presented as categorical variables. 3) Results: Authors should explain why IGRA, abdominal CT, PCR and culture of colonoscopy specimens, and stool tests were not performed in all patients and the rationale/consideration behind these decisions. Please define the cut-off for positive IGRA results and indicate any risk factors associated with the negative IGRA result. Explain why histopathologic specimens were only available for review in 51 out of 108 patients. Please define “positive tissue pathology” on page 8. 4) Discussion: On page 12, the authors mentioned that PCR only detects the IS6110 gene meanwhile in methods it was mentioned that multiplex PCR was done. Multiplex PCR amplifies more than one target gene. Please clarify. 5) Conclusion: The authors should refrain from mentioning patients requiring empirical treatment as they were not discussed in the results section. 6) Tables and figure legends: It might be better for authors to present table 1 in order of the highest percentage to the lowest for each category. Table 1, colonoscopy findings, number of ulcers: Please define what is meant by multiple ulcers and why patients with 2-5 ulcers and >5 ulcers were not categorized as having multiple ulcers. Table 1, CT findings, abdominal lymphadenopathy: Please current the type “611.3%” and include a description of lymph nodes for the other 18 (39.2%) patients. Figure legend 1: Please add a more specific description for each subfigure 1A-1D. 7) References: Duplicate references were found (reference numbers 10 and 17 also reference numbers 11 and 18), please make necessary changes. Authors should also consider using more recent references as 24 references cited were published more than 10 years ago and 13 references cited were published more than 5 years ago. Reviewer #3: This is only retrospective study from one tertiary center not large population study Analysis for sensitivity may not appropriate given the data and not gold standard, the diagnosis criteria intestinal lesion with other organ active TB is also not reliable The term "Diagnostic yield" more appropriate ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Mikhail Reshetnikov Reviewer #2: No Reviewer #3: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 1 |
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Clinical characteristics and diagnosis of intestinal tuberculosis in clinical practice at Thailand’s largest national tertiary referral center: An 11-year retrospective review PONE-D-22-30114R1 Dear Dr. Limsrivilai, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Mao-Shui Wang Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: (No Response) Reviewer #3: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #3: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: I Don't Know Reviewer #3: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #3: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: (No Response) Reviewer #3: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: (No Response) Reviewer #3: (No Response) ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: MIKHAIL NIKOLAEVICH RESHETNIKOV Reviewer #3: Yes: hasan maulahela ********** |
| Formally Accepted |
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PONE-D-22-30114R1 Clinical characteristics and diagnosis of intestinal tuberculosis in clinical practice at Thailand's largest national tertiary referral center: An 11-year retrospective review Dear Dr. Limsrivilai: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Mao-Shui Wang Academic Editor PLOS ONE |
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