Peer Review History
| Original SubmissionAugust 1, 2022 |
|---|
|
PONE-D-22-21604Recommendations and Guidelines for Creating Scholarly Journals: A Scoping ReviewPLOS ONE Dear Dr. Jeremy Y. Ng Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jan 21 2023 11:59PM If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Shahabedin Rahmatizadeh, Ph.D. Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. We note that you have stated that you will provide repository information for your data at acceptance. Should your manuscript be accepted for publication, we will hold it until you provide the relevant accession numbers or DOIs necessary to access your data. If you wish to make changes to your Data Availability statement, please describe these changes in your cover letter and we will update your Data Availability statement to reflect the information you provide. 3. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. 4. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors have done a credible job in writing this manuscript. I have the following suggestions to encourage authors to inspire thought in addressing the following: 1. Authors may build this in the background: -What is the rationale for having more journals despite having existing ones? -Given that there are practices developed by COPE, DOAJ and others, why is there a further need for having these guidelines? 2. It might be helpful for the readers to have the findings organized in a tabular format with having identified the unique features as well as loopholes in the existing guidelines. 3. It would have also been helpful to add a brief section on ethically publishing journals, given that there is a hoard of scavenger journals, old and new, identified every year. 4. Authors may take the liberty of adding a recommendations section in response to the existing loopholes, especially given that it is a scoping review and may lend some room to the same. -For example, having a reputed editorial board and indexing may be effective but several times it does not necessarily warrant credibility of a scholarly journal. 5. Would having a global guideline for all publishers, big and small, do justice? This may be a scope for this manuscript given that authors wish to work on recommendations. Reviewer #2: The purpose of this paper is to answer the research question “What recommendations exist for starting a scholarly biomedical journal”. It approaches this research question by engaging in a literature review of both primary sources and gray literature in the English language. The review first isolated relevant sources, filtered according to language (English) and relevance. The results of the review are broken down from there into discrete recommendations which were then de-duplicated and coded by theme. I found the overall methodology compelling and the granularity with which the process was laid out to be adequate and appropriate. The authors were meticulous in their study design, including in their registering the study with the OSF. The writing in the paper was clear and I found nearly all of my questioned answered as the paper progressed. In particular, the inclusion of the full search strategy, including queries by database, provided important data for the reader and for repeatability. There are only a few minor areas in which I think the authors should consider adding changes. The first involves the difference between the stated research question, noted above, and this statement in the abstract: “This scoping review aimed to identify and describe existing guidelines for starting a biomedical scholarly journal.”. The differences in these statements, including the difference between guidelines and recommendations. As stated on page 4 “Guidelines and Recommendations: A CDC Primer” (https://stacks.cdc.gov/view/cdc/81408/cdc_81408_DS1.pdf, cited in the document as coming from the WHO handbook for guideline development, although the link in the report is inactive), “Guidelines are documents that contain recommendations about health interventions whether they be clinical, public health, or policy recommendations. Recommendations provide information about what policy makers, health care providers, or patients should do. Recommendations imply choices between different interventions that have an impact on health and that have ramifications for the use of resources.” The difference is significant enough that I believe the authors should just use the research question in the abstract. Given that the researchers opted to restrict their search methodology to title and abstract searches, I think they should spend more time describing why they made that choice rather than utilizing full text searching to locate articles that may contain recommendations that are relevant even if journal publishing is not the main thrust of the article in question. I suspect I know why this choice was made, but I would like verification from the authors rather than relying on my own assumptions. Because this paper limited the literature review to English journals, by necessity it missed literature that may exist on this subject from regions such as Africa and the Indian subcontinent where we see significant numbers of new journals emerging. While all studies need to be scoped for a variety of reasons, I would have liked to have seen the authors make more of a nod to that limitation, rather than just noting it as a limitation of the language. Another thing worth noting is that some of the descriptions of the operational modalities of predatory journals may actually be instructive in constructing guidelines in this case. While such journals are not a healthy mechanism for scientific discovery, they have been successful in recruiting unsuspecting new researchers and in publicizing themselves. A future direction for this research may involve studying the tools and methods those journals employ to see if those methodologies could be turned to more constructive purposes. Such a direction may be worth a nod in the conclusion. I do not see sources 7, 16, 17, 18, 19, 20, 21, or 35 noted in the body of the text. In addition to the data included in the appendices the authors should consider uploading RIS (or a similar format) files containing raw and distilled literature search results to OSF. With those minor points made I feel like this is a high-quality paper that covers an important subject using a sound methodology. I recommend it for publication with minor revisions. Reviewer #3: The idea of this paper is both somewhat interesting and relevant, albeit probably only to a limited group of professional: To identify and describe any existing guidelines for starting a scholarly journal. And to investigate whether this can be done through a scoping review methodology. 1) The title promises a scope related to creating scholarly journals as such but only delivers on biomedical journals. Perhaps it could be emphasized in the subtitle that this is indeed the point of the scoping review? 2) Sources: It was curious to see learn that the authors have chosen a host of classical medical science databases for this study, since this would naturally limit identified sources to those fields, while other sources external to medicine might also contain relevant information. The authors could add a little more as to the reasoning behind the choice of primary databases and what this means to potential biases. Also, the authors could spend a few lines arguing why they have not included libraries as a source of relevant information, or potentially information from publishers internal sources. 3) Method: Giving the comments above, it is my impression that the authors put too much emphasis on their methodology when discussing their points and in reaching conclusions. Statistically they are dealing with very low numbers and sources of limited riceness. While the scoping review has been carried out well it seems, its use in discussing the topic is clearly limited. 4) Results: It is hardly surprising that very few sources are identified (33), but perhaps striking that more than 5000 unique sources are obtained initially. Given the subject field and databases etc. It is to be expected that relevant titles are not abundant. 5) Conclusions: I would recommend that the authors consider the possible effects on their conclusions of not having access to publishers' internal information on starting journals. This would probably require a more qualitative approach, however. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Pragya Lodha Reviewer #2: Yes: Jason Bengtson Reviewer #3: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
|
Recommendations and Guidelines for Creating Scholarly Biomedical Journals: A Scoping Review PONE-D-22-21604R1 Dear Dr. Jeremy Y. Ng, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Shahabedin Rahmatizadeh, Ph.D. Academic Editor PLOS ONE Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed Reviewer #3: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: N/A Reviewer #2: Yes Reviewer #3: N/A ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: No ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors have satisfactorily addressed all the comments, and I have no further comments. The manuscript looks promising. Reviewer #2: I appreciate the authors' attention to reviewer feedback and I believe this paper is ready for acceptance. Reviewer #3: Given the authors' responds to the comments to my report, I recommend that the revised version of the manuscript is published. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Pragya Lodha Reviewer #2: Yes: Jason A Bengtson Reviewer #3: Yes: Bertil Fabricius Dorch ********** |
| Formally Accepted |
|
PONE-D-22-21604R1 Recommendations and Guidelines for Creating Scholarly Biomedical Journals: A Scoping Review Dear Dr. Ng: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Shahabedin Rahmatizadeh Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .