Peer Review History
| Original SubmissionJuly 18, 2022 |
|---|
|
PONE-D-22-19820Evaluation of outpatient treatment for non-hospitalised patients with COVID-19 in the UKPLOS ONE Dear Dr. Amanda T Goodwin, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by 2022-10-27. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Seung-Hwa Lee Academic Editor PLOS ONE Journal requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. You indicated that ethical approval was not necessary for your study. We understand that the framework for ethical oversight requirements for studies of this type may differ depending on the setting and we would appreciate some further clarification regarding your research. Could you please provide confirmation from your institutional review board or research ethics committee (e.g., in the form of a letter or email correspondence) that ethics review was not necessary for this study? Please include a copy of the correspondence as an "Other" file. 3. We note that the grant information you provided in the ‘Funding Information’ and ‘Financial Disclosure’ sections do not match. When you resubmit, please ensure that you provide the correct grant numbers for the awards you received for your study in the ‘Funding Information’ section. 4. Thank you for stating the following in the Funding Section of your manuscript: “ATG holds an NIHR-funded Academic Clinical Lecturer post. IPH holds an NIHR Senior Investigator Award.” We note that you have provided funding information that is not currently declared in your Funding Statement. However, funding information should not appear in the Acknowledgments section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: “ATG holds an NIHR-funded Academic Clinical Lecturer post. IPH holds an NIHR Senior Investigator Award. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.” Please include your amended statements within your cover letter; we will change the online submission form on your behalf. 5. Thank you for stating the following in the Competing Interests section: “ATG and JST - None to declare IPH has a funded research collaboration with Boehringer Ingelheim (unrelated to the topic of this paper)” Please confirm that this does not alter your adherence to all PLOS ONE policies on sharing data and materials, by including the following statement: ""This does not alter our adherence to PLOS ONE policies on sharing data and materials.” (as detailed online in our guide for authors http://journals.plos.org/plosone/s/competing-interests). If there are restrictions on sharing of data and/or materials, please state these. Please note that we cannot proceed with consideration of your article until this information has been declared. Please include your updated Competing Interests statement in your cover letter; we will change the online submission form on your behalf. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The current issue of the benefits from antivirals and nMAbs against SARS CoV-2 is extensively treated in this manuscripts, no final conclusions can be drawn due to the many limitations and caveats of the study correctly considered by the authors. What is striking is that, despite the large amount of patients potentially eligible, only for 1 third of them an assessment for treatment was done. This very low rate of suitable patients for assessment uncovers criticisms on referral pathway. This point has been underlined by the authors but some points need to be clarified: as for M&M it could be useful to clarify in the last paragraph of "Study design"if the process is computerized, if being within a high risk group is an information currently available for all the patients or physicians have to retrive this info case-by-case and which is the timing for registration/transfer of info to CMDU and so on. Finally, due to the poor external validity of these results I suggeste to modify the title in this way: "Evaluation of outpatient treatment for non-hospitalised patients with COVID-19: a mono-institutional experience in UK" Reviewer #2: This is a retrospective review of UK experience of treating high risk immunosuppressed individuals with sotrovimab or molnupiravir for COVID-19. The experience is from December 2021 to Feb 2022 and so looks at the impact of Omicron BA1. At this time the majority were dual or better vaccinated. The criteria are based on UK guidelines for these agents and are already quite restrictive to people with high order immunosuppression. This is important data, as most governments have embraced the use of these agents in their vaccinated populations despite no evidence of efficacy or cost effectiveness. Both mortality and hospitalisation were rare and the analysis is probably under powered to detect a difference. Impact is also lessened by the change in variants and the fact that Sotrovimab is likely no longer effect with current variants, in addition Paxlovid with probably better efficacy would be a more valuable intervention to assess, but this is out of the control of the authors and the data still has value. Major points: 1. The 2 most important points, the first could be highlighted more is that resolving symptoms is an exclusion criteria. 266 were excluded with resolving symptoms, given the subjective nature of this, 2 deaths in the resolving symptoms group, and 15 admissions at d28 for COVID suggests this should not be an exclusion criteria for treatment. This could be made clearer. 2. The fact that those from more deprived backgrounds are also less likely to receive treatment is important but well highlighted. Can the authors give any further insight why? 3. Admission at d28 was 3% in untreated vs 1.2% in treated with an OR 0.4 (95%CI 0.12 to 1.36). Can the authors calculate/estimate the sample size they would need to see an effect with this event rate? 4. Table 2 in vaccination status, would be helpful to add categories for more than x2 and more than x3 vaccinations with percentages. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Peter AB Wark ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
|
PONE-D-22-19820R1Evaluation of outpatient treatment for non-hospitalised patients with COVID-19: The experience of a regional centre in the UKPLOS ONE Dear Dr. Amanda T Goodwin Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Feb 10 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Seung-Hwa Lee Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Here is response from Reviewer 1 The current issue of the benefits from antivirals and nMAbs against SARS CoV-2 is extensively treated in this manuscripts, no final conclusions can be drawn due to the many limitations and caveats of the study correctly considered by the authors. What is striking is that, despite the large amount of patients potentially eligible, only for 1 third of them an assessment for treatment was done. This very low rate of suitable patients for assessment uncovers criticisms on referral pathway. This point has been underlined by the authors but some points need to be clarified: as for M&M it could be useful to clarify in the last paragraph of "Study design"if the process is computerized, if being within a high risk group is an information currently available for all the patients or physicians have to retrive this info case-by-case and which is the timing for registration/transfer of info to CMDU and so on. Finally, due to the poor external validity of these results I suggeste to modify the title in this way: "Evaluation of outpatient treatment for non-hospitalised patients with COVID-19: a mono-institutional experience in UK" and Review 2 This is a retrospective review of UK experience of treating high risk immunosuppressed individuals with sotrovimab or molnupiravir for COVID-19. The experience is from December 2021 to Feb 2022 and so looks at the impact of Omicron BA1. At this time the majority were dual or better vaccinated. The criteria are based on UK guidelines for these agents and are already quite restrictive to people with high order immunosuppression. This is important data, as most governments have embraced the use of these agents in their vaccinated populations despite no evidence of efficacy or cost effectiveness. Both mortality and hospitalisation were rare and the analysis is probably under powered to detect a difference. Impact is also lessened by the change in variants and the fact that Sotrovimab is likely no longer effect with current variants, in addition Paxlovid with probably better efficacy would be a more valuable intervention to assess, but this is out of the control of the authors and the data still has value. Major points: 1. The 2 most important points, the first could be highlighted more is that resolving symptoms is an exclusion criteria. 266 were excluded with resolving symptoms, given the subjective nature of this, 2 deaths in the resolving symptoms group, and 15 admissions at d28 for COVID suggests this should not be an exclusion criteria for treatment. This could be made clearer. 2. The fact that those from more deprived backgrounds are also less likely to receive treatment is important but well highlighted. Can the authors give any further insight why? 3. Admission at d28 was 3% in untreated vs 1.2% in treated with an OR 0.4 (95%CI 0.12 to 1.36). Can the authors calculate/estimate the sample size they would need to see an effect with this event rate? 4. Table 2 in vaccination status, would be helpful to add categories for more than x2 and more than x3 vaccinations with percentages. [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
|
Evaluation of outpatient treatment for non-hospitalised patients with COVID-19: The experience of a regional centre in the UK PONE-D-22-19820R2 Dear Dr. Amanda T Goodwin, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Seung-Hwa Lee Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
|
PONE-D-22-19820R2 Evaluation of outpatient treatment for non-hospitalised patients with COVID-19: The experience of a regional centre in the UK Dear Dr. Goodwin: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Seung-Hwa Lee Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .