Peer Review History
| Original SubmissionJuly 26, 2022 |
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PONE-D-22-20982Tannic acid, an IL-1β-direct binding compound, ameliorates IL-1β-induced inflammation and cartilage degradation by hindering IL-1β-IL-1R1 interactionPLOS ONE Dear Dr. Heo, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Oct 23 2022 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Dear Authors, Thank you for submitting the manuscript entitled "Tannic acid, an IL-1β-direct binding compound, ameliorates IL-1β-induced inflammation and cartilage degradation by hindering IL-1β-IL-1R1 interaction." In this paper, authors investigated the role of tannic acid (TA) in the inhibition of the interaction between IL-1 β and IL-1R1, confirming the chondroprotective effects of TA due the suppression of MAPK and NF-κB signaling in IL-1β-induced OA rat model. The paper has some strengths, but there are some critical points that need clarification and improvement especially concerning gene expression analyses. Abstract As reported in the submission guidelines, the abstract should not exceed 300 words. Please reduce its length trying to (i) describe the main objective of the study, (ii) explain how the study was done without methodological detail, and (iii) summarize the most important results and their significance. Introduction In the Introduction section (lines 85-86), authors assert that “many researchers have considered inhibiting the interaction between IL-1β and IL-1R1 as a therapeutic target for the treatment of various IL-1-related diseases.” Please, list some examples of IL-1-related diseases, also adding appropriate recent references. For instance, since it is well-established that the most common side effects of CAR T cells therapy are cytokine release syndrome, developing new treatment options for CAR T cell-mediated toxicities based on IL-1 blockade has become an important part of immuno-oncological research. Materials and Methods Throughout the manuscript, please refer to the following reference for the correct nomenclature to use for human genes, especially for the use of italics (as also reported in the submission guidelines): Bruford, E. A., Braschi, B., Denny, P., Jones, T., Seal, R. L., & Tweedie, S. (2020). Guidelines for human gene nomenclature. Nature genetics, 52(8), 754–758. https://doi.org/10.1038/s41588-020-0669-3. 2.7. Real-time polymerase chain reaction (RT-PCR) This reviewer strongly recommends following the MIQE guidelines (The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin Chem. 2009 Apr;55(4):611-22. doi: 10.1373/clinchem.2008.112797), not only to use the correct nomenclature in the text, but also to enable other investigators to reproduce results. In this respect, please replace abbreviation qPCR with RT-qPCR if you performed reverse transcription–qPCR. Moreover, although the use of a reference gene an internal control is the most common method for normalizing cellular mRNA data, the chosen reference gene should be stably expressed between treatment groups. Hence, normalization against a single reference gene (e.g., GAPDH), as reported by the authors, is not acceptable unless the investigators present clear evidence that confirms its invariant expression under the experimental conditions described. To this regard, has the M-value (the measure of expression stability) of your reference gene been calculated? Have the authors purchased certified primers? In this case, please add information regarding the Company. On the other hand, if primers were custom designed, please add the length of amplicons in an appropriate Table. 2.12. Histopathological Analyses Since histopathological analyses were performed on tissues of OA rat model, this reviewer suggests referring to the work of Gerwin et al. for a more appropriate use of the OARSI score: Gerwin, N.; Bendele, A.M.; Glasson, S.; Carlson, C.S. The OARSI histopathology initiative—Recommendations for histological assessments of osteoarthritis in the rat. Osteoarthr. Cartil. 2010, 18, S24–S34. Results 3.1. Screening and affinity determination of IL-1β-blocking candidate Line 270: what is the meaning of #397 after Fig. 1A within the brackets? Concerning Figure 1A, please enhance the scale of the y-axis to show all the SD bars. 3.4. Effect of TA on the MAPK and NF-κB signaling pathways in IL-1β-stimulated human OA chondrocytes Since TA showed a remarkable inhibitory effect on the IL-1β-induced phosphorylation of p38, ERK, JNK, p65, and IκBα, have authors tested specific inhibitors of MAPK and NF-κB signaling pathways, as negative controls? Discussion In the Discussion section, authors should comment on the fact which the enthusiasm for IL-1 as a target in OA is rapidly dwindling. In this regard, as reported by Prof. TL Vincent (doi: 10.12688/f1000research.18831.1), in vivo models show a conflicting role for IL-1 molecule; early studies using therapeutic approaches in large animal models show a benefit, but most murine studies fail to demonstrate protection where the ligands (IL-1α/β), the cytokine activator (IL-1–converting enzyme), or the receptor (IL-1R) have been knocked out. Recently, some large double-blind randomised controlled clinical studies targeting IL-1 have failed. Reviewer #2: The manuscript is technically sound and well written. However, several points need be tackled, especially in the statistical analysis part and in the corresponding conclusions, in order to improve the manuscript. Additionally, some ambiguities exist and they need clarification. Below are my suggestions and concerns: Introduction 1.Lines 101 – 105: the sentences are ambiguous. Can the authors please reformulate these sentences? Materials & Methods 2.The authors are advised to check section 2.5 for possible errors in listing the performed ELISA assays. Did the author perform ELISA assay for MMP-3 & MMP13 or PGE2? 3.Section 2.1: Can the authors please define what did they use as positive and negative controls? 4.Lines 233-234: the sentence is ambiguous. Can the authors please reformulate this sentence? Results 5.Authors are advised to check the abbreviations and signs used in the figures as many of these are not defined in the legends (For ex: +/-; NC; PC; NT…). 6.Figure 1A: The authors included only few of the 2303 tested molecules in the figure. Obviously, it would be impossible to include all the tested molecules, but why the authors chose to represent specifically the results of these compounds among others? And what are these compounds? As in the codes used for these compounds are not defined in the legend. 7.Lines 274-275: “the interaction between IL-1β and IL-1R1 was inhibited by TA in a dose dependent manner under harsh conditions”. The p-value presented in the figure 1B is for the comparison between the different TA concentrations and the negative control. If the authors are testing the dose-dependent effect, the p-values for the comparisons between the different concentrations of TA should be calculated and used to make conclusions. 8.Lines 277-279: the authors concluded that “TA reduced Il-1β induced SEAP secretion in a dose dependent manner” and that TA showed no cytotoxic effect at 100μΜ. It is not clear what the obtained p-values for these analyses are. And which comparison do they represent? 9.Figure 2, 3 & 4: Authors should identify which groups serve as positive and negative controls (in the materials and methods section). 10.Figure 3: It seems like the legend attributed to figure A corresponds to figure B and vice-versa. Can the authors please checks figure 3 legend? 11.Figure 4: Why did the authors studied the effect of TA on MAPK pathway with a single TA concentration of 2 μΜ while the TA effect on NF-κB pathway was studied with 1 & 2 μΜ of TA? 12.Figure 5: The authors compared the therapeutic effect of TA and vehicule as well as Celecobix and vehicule. It would be interesting to compare also the effect of TA to Celecobix to see if the effect of TA on the studied OA features is similar to Celecoxib or inferior/superior 13.Line 626: Can the author please check the number of rats in each group as in figure 5B it looks as there is 15 rats/group but in the text it is mentioned that there are 5 rats/group. Discussion 14.Lines 376-378: the sentence is ambiguous. Can the authors please reformulate this sentence? 15.Lines 378-379: “We confirmed that the reduction in IL-1β signaling by TA was similar to that observed following treatment with soluble IL-1R1 or an anti-IL-1β neutralizing antibody”. However, in figures 2 & 3, the authors didn’t compare the effect of TA to the effect of soluble IL-1R1 or anti-IL-1β neutralizing antibody. The p-values represented in the figures are for the comparison between different concentrations of TA & IL-1β treated group. 16.Lines 388 -389: lack references. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Tannic acid, an IL-1β-direct binding compound, ameliorates IL-1β-induced inflammation and cartilage degradation by hindering IL-1β-IL-1R1 interaction PONE-D-22-20982R1 Dear Dr. Tae-Hwe Heo, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Hassan Zmerly, MD PhD Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors have addressed the issues raised previously, and the manuscript is suitable for publication in its current form. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No ********** |
| Formally Accepted |
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PONE-D-22-20982R1 Tannic acid, an IL-1β-direct binding compound, ameliorates IL-1β-induced inflammation and cartilage degradation by hindering IL-1β-IL-1R1 interaction Dear Dr. Heo: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Professor Hassan Zmerly Academic Editor PLOS ONE |
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